[mira_talk] Re: Megahub info
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 25 Jun 2009 19:43:23 +0200
On Donnerstag 25 Juni 2009 Björn Nystedt wrote:
> [...]
> I think the megahub is actually an artefact; the single read in the megahub
> logfile is a long (15kb) fake read comprising a complete PCR product. (The
> complte run is 300000 GS20, 16000 Sanger and ~20 PCR fake reads)
Ah ... the fake PCRs is some crucial info which was missing. Yes, that
explains a bit the behaviour.
You sure you don't want to do a mapping assembly? Or a combined mapping and
de-novo assembly?
Regards,
Bastien
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