Hi Bastien, The manual still only talks about the /1 and /2 suffixes for the "solexa" naming scheme: http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html#sect_ref_manifest_readgroups Am I right that this has since been extended to handle the current Illumina naming where we get readname, space, 1 or 2, colon, etc? It would help to have that clarified in the manual, Thanks! Peter -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html