[mira_talk] Re: Filtering out crappy sequence - try my sff2phd
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 5 Apr 2012 21:01:25 +0200
On Apr 5, 2012, at 1:01 , Markiyan Samborskyy wrote:
> I may suggest to try my sff2phd converter, which has a configurable
> crap reads removal and can output in phd, fasta or fastq (Q+64)
> format. It is included in the latest version of the consed (22).
Whoa. Nice thing, albeit two questions immediately arise:
- was there a reason not to use / extend sff_extract?
- why Q+64? Even Illumina saw the light and moved to the standard Q+33
> PS: Dear Basrien, if you like it - feel free to add it to the mira
> contrib, so other users can benefit from it.
Thanks for that. I'm on travel right now, I'll have a look at that when I
return :-)
Best,
Bastien
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