Make sure the "databasename .g5x" (which is created along with database.g5d
while using tg_index on .caf file) is also present in the same folder.
On 14 December 2015 at 13:50, Chitra P <pattabiraman.chitra@xxxxxxxxx>
wrote:
Hi,
Thank you for the reply.I just tried using the CAF file as the input for
tg_index however I am still unable edit (or see the effect of my editing?).
Is there some other file I need to load into gap5 other than the .g5d ?
Thanks,
Chitra
On Mon, Dec 14, 2015 at 1:29 PM, Andrej Benjak <abenjak@xxxxxxxxx> wrote:
I used to use tg_index on the original CAF file and have never had
problems. Could you try?
cheers,
Andrej
On 12/13/2015 06:58 AM, Chitra P wrote:
Hi,
I know this is slightly off-topic for the MIRA list, but I would be
grateful for any help with this.
I want to edit a MIRA assembly with gap5 ( I have installed
staden-2.0.0b9.i686 on a Ubuntu 14.04). At present, I am able to load but
unable to edit the sequences.
This is what I did :
I converted the MIRA maf and fasta files to sam
then used tg_index to convert it to a gap5 database
I am able to view the sequences but unable to edit the sequence. In my
terminal get the following error message when I try editing
*'D8YB9:08803:07440': couldn't open*
Thanks,
PC
