[mira_talk] Editing/ cleanup of MIRA assembly with gap5

  • From: Chitra P <pattabiraman.chitra@xxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Sun, 13 Dec 2015 11:28:31 +0530

Hi,

I know this is slightly off-topic for the MIRA list, but I would be
grateful for any help with this.

I want to edit a MIRA assembly with gap5 ( I have installed
staden-2.0.0b9.i686 on a Ubuntu 14.04). At present, I am able to load but
unable to edit the sequences.

This is what I did :
I converted the MIRA maf and fasta files to sam

then used tg_index to convert it to a gap5 database

I am able to view the sequences but unable to edit the sequence. In my
terminal get the following error message when I try editing

*'D8YB9:08803:07440': couldn't open*


Thanks,

PC

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