[mira_talk] Re: CNAG
- From: Robin Kramer <kodream@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 28 Mar 2011 11:18:15 -0600
I think it would be cool if there were a MNAG, or competition to see who
could do the best assemblies with Mira type datasets.
Just to see who could come up with the best Mira settings.
Sincerely yours,
Robin
On Fri, Mar 25, 2011 at 3:15 PM, Tony Travis <a.travis@xxxxxxxxxx> wrote:
> On 25/03/11 20:15, Bastien Chevreux wrote:
>
>> [...]
>>
>> Then there's another problem: just one of the 8x coverage libraries
>> (which would be by far not enough anyway) of 1.8 gb with 36bp reads
>> represents ~450m reads! Not really much less than 800m reads.
>>
>> If I made my calculations right, the whole data set has something like
>> 1.8 to 2 billion reads.
>>
>
> Hi, Bastien.
>
> Sorry, I was thinking about insert coverage, not read coverage...
>
> I've now checked the number of reads in the actual dnGASP data files and,
> of course, your calculations are right ;-)
>
> Bye,
>
>
> Tony.
> --
> Dr. A.J.Travis, University of Aberdeen, Rowett Institute of Nutrition
> and Health, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland, UK
> tel +44(0)1224 712751, fax +44(0)1224 716687, http://www.rowett.ac.uk
> mailto:a.travis@xxxxxxxxxx, http://bioinformatics.rri.sari.ac.uk
>
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