[mira_talk] Re: Assembly finishing
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 15 Apr 2009 00:03:56 +0200
On Tuesday 14 April 2009 Lionel Guy wrote:
> - Is there any alternative to consed (or to gap4, that is not really
> suitable if you have half a million reads)?
> I would be very pleased if you would share your experience in that
> matter...
Ummm ... I had gap4 running with projects of up to 4 million reads. It
admittedly gets somewhat slow with these sizes, but a a fast processor and a
healthy dose of RAM helps a lot.
I'd also be interested to see gap5, but I do not know how active James is in
that development.
Then again ... I take everything back I just wrote as I quickly checked on
SourceForge: James has just released a preview of gap5:
http://sourceforge.net/forum/forum.php?forum_id=938617
He writes it is very alpha, but still: Yipie.
Regards,
Bastien
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