[mira_talk] Assembly finishing

Hi there,

I have an issue that is somewhat weakly related to mira...
I am currently using consed to finish assemblies (checking misassemblies, designing primers for PCR, adding PCR-product end- sequencing results, etc...). I'm only half-satisfied with that solution, for several reasons, and would like to explore new possibilities, and have a couple of questions:
- Is there a way to display the IUPc, UNSc, SRMc, WRMc, etc. tags in consed? I have tried, but not succeeded so far - Is there any alternative to consed (or to gap4, that is not really suitable if you have half a million reads)?
I would be very pleased if you would share your experience in that matter... 

Best,

Lionel


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