[mira_talk] Assembly finishing
- From: Lionel Guy <guy.lionel@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 14 Apr 2009 15:25:23 +0200
Hi there,
I have an issue that is somewhat weakly related to mira...
I am currently using consed to finish assemblies (checking
misassemblies, designing primers for PCR, adding PCR-product end-
sequencing results, etc...). I'm only half-satisfied with that
solution, for several reasons, and would like to explore new
possibilities, and have a couple of questions:
- Is there a way to display the IUPc, UNSc, SRMc, WRMc, etc. tags in
consed? I have tried, but not succeeded so far
- Is there any alternative to consed (or to gap4, that is not really
suitable if you have half a million reads)?
I would be very pleased if you would share your experience in that
matter...
Best,
Lionel
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