[rmaexpress_help] Re: RMAExpress 1.0 beta 1

For actually citing RMA use one or both of the papers mentioned on the
webpage ie:

Bolstad, B.M., Irizarry R. A., Astrand, M., and Speed, T.P. (2003), A
Comparison of Normalization Methods for High Density Oligonucleotide
Array Data Based on Bias and Variance. Bioinformatics 19(2):185-193 

Rafael. A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M.
Cope, Bridget Hobbs and Terence P. Speed (2003), Summaries of Affymetrix
GeneChip probe level data Nucleic Acids Research 31(4):e15 


To cite, the software it is probably more journal dependent. I'd prefer
that your reference refers to the exact version of the software you used
and the website address. But it would also be acceptable to me for you
to cite the users guide instead.

Best,

Ben




On Sun, 2007-05-06 at 16:57 +0200, Olivier Schaad wrote:
> 
> Dear Ben,
>         I would like to refer to RMA EXpress in a publication, do you
> have a example as you consider a a good  way to refer about RMA and
> RMA express
> 
> best regards
> 
> 
> At 03:30 AM 3/26/2007, Ben Bolstad wrote:
> > RMAExpress 1.0 beta 1 has been released. It can be downloaded at
> > 
> > http://rmaexpress.bmbolstad.com
> > 
> > New Features
> > - Provides the PLM summarization method
> > - NUSE and RLE quality assessment statistics
> > - Boxplots/Density plots of raw data
> > 
> > SPECIAL NOTE
> > Since this is the first public release of many features there may be
> > numerous potential issues/unresolved bugs. Fixes may be slow in
> > coming.
> > 
> > Unless you desire to live on the cutting edge use the 0.5 release
> > version. It remains the stable version.
> > 
> > -- 
> > Ben Bolstad <bmb@xxxxxxxxxxxxx>
> > http://bmbolstad.com
> 
> Please consider the environment before printing this email - Pensez
> svp à l'environnement avant d'imprimer ce message
> *****************************************************************
> 
> 
> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
> Dr. Olivier Schaad
>                         telephone: (+41-22) 379 64 78
> Chargé d'enseignement / Data Analyst             fax:
> (+41-22)379 64 76
> Genomics Platform NCCR "Frontiers in Genetics"
> Université de Genève/ Fac Sciences                      
> 30, Quai E Ansermet
> CH-1211 Geneva 4, Switzerland
> e-mail: Olivier.Schaad@xxxxxxxxxxxxxxxx       
> http://www.frontiers-in-genetics.org            
> <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
> 
> 
> 
>

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