[overture] Re: parallel overture and openmpi
- From: Alessandro Orchini <aorchini@xxxxxxxxxx>
- To: <overture@xxxxxxxxxxxxx>
- Date: Mon, 26 Mar 2012 18:18:10 +0200
Thanks Bill,
of course I forget the MPI_ROOT variable, adding that the make worked.
But now I'm facing a new problem with cg.v24: when i make the program the
compiler print out a huge list of errors of the type
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/istream:691:
error: template with C linkage
followed by some errors about MPI:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions.h:61: error:
declaration of C function ‘void MPI::Init()’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions.h:58: error:
previous declaration ‘void MPI::Init(int&, char**&)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions.h:86: error:
declaration of C function ‘int MPI::Init_thread(int)’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions.h:83: error:
previous declaration ‘int MPI::Init_thread(int&, char**&, int)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:40: error:
declaration of C function ‘void MPI::Register_datarep(const char*, int
(*)(void*, ompi_datatype_t*, int, void*, MPI_Offset, void*), void (*)(void*,
MPI::Datatype&, int, void*, MPI::Offset, void*), void (*)(const MPI::Datatype&,
MPI::Aint&, void*), void*)’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:33: error:
previous declaration ‘void MPI::Register_datarep(const char*, void (*)(void*,
MPI::Datatype&, int, void*, MPI::Offset, void*), void (*)(void*,
MPI::Datatype&, int, void*, MPI::Offset, void*), void (*)(const MPI::Datatype&,
MPI::Aint&, void*), void*)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:47: error:
declaration of C function ‘void MPI::Register_datarep(const char*, void
(*)(void*, MPI::Datatype&, int, void*, MPI::Offset, void*), int (*)(void*,
ompi_datatype_t*, int, void*, MPI_Offset, void*), void (*)(const
MPI::Datatype&, MPI::Aint&, void*), void*)’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:40: error:
previous declaration ‘void MPI::Register_datarep(const char*, int (*)(void*,
ompi_datatype_t*, int, void*, MPI_Offset, void*), void (*)(void*,
MPI::Datatype&, int, void*, MPI::Offset, void*), void (*)(const MPI::Datatype&,
MPI::Aint&, void*), void*)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:54: error:
declaration of C function ‘void MPI::Register_datarep(const char*, int
(*)(void*, ompi_datatype_t*, int, void*, MPI_Offset, void*), int (*)(void*,
ompi_datatype_t*, int, void*, MPI_Offset, void*), void (*)(const
MPI::Datatype&, MPI::Aint&, void*), void*)’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/file.h:47: error:
previous declaration ‘void MPI::Register_datarep(const char*, void (*)(void*,
MPI::Datatype&, int, void*, MPI::Offset, void*), int (*)(void*,
ompi_datatype_t*, int, void*, MPI_Offset, void*), void (*)(const
MPI::Datatype&, MPI::Aint&, void*), void*)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:96:
error: ‘void MPI::Init(int&, char**&)’ should have been declared inside ‘MPI’
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h: In
function ‘void MPI::Init(int&, char**&)’:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:96:
error: declaration of C function ‘void MPI::Init(int&, char**&)’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions.h:61: error:
previous declaration ‘void MPI::Init()’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h: At
global scope:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:103:
error: ‘void MPI::Init()’ should have been declared inside ‘MPI’
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h: In
function ‘void MPI::Init()’:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:103:
error: declaration of C function ‘void MPI::Init()’ conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:96:
error: previous declaration ‘void MPI::Init(int&, char**&)’ here
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h: At
global scope:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:147:
error: ‘int MPI::Init_thread(int&, char**&, int)’ should have been declared
inside ‘MPI’
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h: In
function ‘int MPI::Init_thread(int&, char**&, int)’:
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:147:
error: declaration of C function ‘int MPI::Init_thread(int&, char**&, int)’
conflicts with
/usr/lib64/openmpi/1.4-gcc/include/openmpi/ompi/mpi/cxx/functions_inln.h:137:
error: previous declaration ‘int MPI::Init_thread(int)’ here
make[1]: *** [obj/PETScSolver.o] Error 1
make[1]: Leaving directory `/local_data/usr/src/SW/cg.v24/ins'
make: *** [cgins] Error 2
I think all the variable are well defined this time, is a compiler version
problem? With the same compiler I installed the serial version without any
problem!
Thanks
Alessandro
Date: Wed, 21 Mar 2012 08:58:15 -0700
From: henshaw@xxxxxxxx
To: overture@xxxxxxxxxxxxx
Subject: [overture] Re: parallel overture and openmpi
Hi Alessandro,
mpi.h cannot be found -- I think you may need to define MPI_ROOT
...Bill
On 03/21/2012 05:05 AM, Alessandro Orchini wrote:
Hi,
I'm installing a parallel version of Overture on Red Hat -
Scientific Linux SL release 5.7, on which I've installed
successfully the serial version
So far i've installed openmpi and I've compiled P++, hdf5 in
parallel and PETSc switching on the mpi configure option.
Then I've configured Overture with the following commands
export APlusPlus=/home/orchini/SW/A++P++-0.8.0/P++/install/
export PPlusPlus=/home/orchini/SW/A++P++-0.8.0/P++/install/
export OpenGL=/usr
export XLIBS=/usr
export MOTIF=/usr
export HDF=/home/orchini/SW/hdf5-1.6.5
export Overture=/home/orchini/SW/Overture.v24
export PETSC_DIR=/home/orchini/SW/petsc-2.3.2
export PETSC_ARCH=linux-gnu-opt
export PETSC_LIB=$PETSC_DIR/lib/$PETSC_ARCH
export LAPACK=/usr
./configure multigrid petsc useHDF5 opt parallel FC=gfortran
CC=g++ cc=gcc
and it seems to work fine, but when I type make i got the
following error:
g++ -DHAVE_CONFIG_H -I.
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../..
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../include
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../PARTI
-I/include
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PADRE/src
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PADRE
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PADRE/PGSLIB
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PADRE/PGSLIB
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PGSLIB
-I/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../PGSLIB
-O -fPIC -Wno-deprecated -c partitioning.C
partitioning.C:10:20: error: mpi.h: No such file or directory
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:24:
error: ‘MPI_Request’ has not been declared
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:25:
error: ‘MPI_Request’ has not been declared
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:27:
error: ‘MPI_Request’ has not been declared
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:28:
error: ‘MPI_Request’ has not been declared
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:29:
error: ‘MPI_Request’ was not declared in this scope
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:29:
error: ‘gid’ was not declared in this scope
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:30:
error: ‘MPI_Request’ was not declared in this scope
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/mpi-port.h:30:
error: ‘gid’ was not declared in this scope
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../PARTI/port.h:56:
error: ‘MPI_Comm’ does not name a type
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../include/comm_man.h:46:
error: ‘MPI_Group’ does not name a type
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../include/comm_man.h:47:
error: ‘MPI_Comm’ does not name a type
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../include/comm_man.h:99:
error: ISO C++ forbids declaration of ‘MPI_Comm’ with no type
/home/orchini/SW/A++P++-0.8.0/P++/install//../src/array_src/../../include/comm_man.h:99:
error: expected ‘;’ before ‘&’ token
make[1]: *** [partitioning.o] Error 1
make[1]: Leaving directory
`/local_data/usr/src/SW/Overture.v24/GridFunction'
make: *** [all] Error 2
Should I define some extra variable that I am missing?
Thanks
Alessandro
Other related posts:
