[mira_talk] Re: problem in denovo assembly fasta file
- From: Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx>
- To: "mira_talk@xxxxxxxxxxxxx" <mira_talk@xxxxxxxxxxxxx>
- Date: Mon, 18 Nov 2013 11:20:30 +0000
On Mon, Nov 18, 2013 at 11:15 AM, Amit Bikram <amitbikram87@xxxxxxxxx> wrote:
> Hi.
>
> i have used this command
> mira --project=isab --job=denovo,genome,accurate,454
> --fasta=isab_in.454.fa 454_SETTINGS -LR:wqf=no > log.txt
>
>
> and i am getting this error
>
>
> This is MIRA V3.4.1.1 (production version).
> ...
> Loading data from FASTA file:
> [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%]
> ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|....
> [90%] ....|...
>
>
> this is in log file and in command line it shows KILLED
>
> please help me to find out the error
I'm sure Bastien will comment if there is anything suspicious on
the MIRA side, but it seems happy with your command line
options and had started loading your data.
The "KILLED" bit suggests the operating system killed the job -
most likely due to system limits like running out of RAM.
How much RAM does this machine have?
Peter
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