From: Nestor Zaburannyi<nestor@xxxxxxxxxxxxx> > > Are you sure that those reads are chimeric? I ask because MIRA has become > > quite good at filtering them out and they should appear in contigs only > > very, very rarely nowadays. > I am pretty sure. Most of the time, bases that are "out of alignment" and > with coverage=1 at the end of one contig can be mapped in the middle of > other contigs. Which version of MIRA? B. -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html