Hi bastien
I was planning to use mirabait to identify transcripts http://up:32400/web/itch
homologous to fragments under 80 bp long...
It sounds like I should build statically with 65k as a max value, on a new
machine... An be careful not to use it for long vs. long.
Reasonable?
Thanks!
Brad
On Oct 9, 2015, at 1:12 AM, Bastien Chevreux
<bach@xxxxxxxxxxxx<mailto:bach@xxxxxxxxxxxx>> wrote:
On 09 Oct 2015, at 0:34 , Langhorst, Brad
<Langhorst@xxxxxxx<mailto:Langhorst@xxxxxxx>> wrote:
I'd like to build mirabait with SKIM3_MAXREADSIZEALLOWED larger... (some
transcripts in the human transcriptome are larger than 29900)
Easy enough to change the value...
And while we are at it: the total alignment length of two reads is stored as 16
bit integer. That's something deep in the bowels of MIRA and cannot be changed
very easily. That is: the length of two reads which overlap may not exceed
65535 bp. Meaning: I do not do not increase the maximum allowed read size
beyond 32500 or thing will break in the most horrible way.
B.
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