Dear Bastien,
forgive me for not providing this information earlier. I am using Mira 4.9 (I
also tried 4.0 before) and here is my manifest file:
project = SAMPLE3_Mira
job = denovo,est,accurate
readgroup
data = path/SAMPLE-3.fastq
technology = iontor
parameters = COMMON_SETTINGS -GENERAL:number_of_threads=48
I am running each sample twice, once as shown above and once with the option
-noclipping=all
Another problem is that I am running the analyses on a cluster with 48 hours
time-wall. Thus I need to resume the analysis every two day, which I am afraid
is stalling it even more.
Best regards,
Paschalia
________________________________
From: mira_talk-bounce@xxxxxxxxxxxxx <mira_talk-bounce@xxxxxxxxxxxxx> on behalf
of Bastien Chevreux <bach@xxxxxxxxxxxx>
Sent: 31 August 2015 02:40
To: mira_talk@xxxxxxxxxxxxx
Subject: [mira_talk] Re: big transcriptome files too long running time
On 28 Aug 2015, at 19:52 , Kapli, Paschalia
<Paschalia.Kapli@xxxxxxxxx<mailto:Paschalia.Kapli@xxxxxxxxx>> wrote:
[...]
Any advice would be highly appreciated,
Which version of MIRA? What was the command line / manifest file? In which pass
is MIRA now?
B.
