[mira_talk] Weird problem
- From: Torben Nielsen <torben@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sat, 25 Oct 2014 18:09:52 -1000
I’m running MIRA 4.0.2. I’ve run it on Fedora 21-alpha and on Fedora 20. In
both cases, the log file stops getting written at the following point. That is,
at “Analyzing log files”. I doubt it was memory errors or anything like that.
It was on two different machines. Both of them had adequate memory; they are
identical and each has 1.5 TB.
Any ideas?
Thanks, Torben
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 IonTor PcBioHQ PcBioLQ Text Solexa SOLiD
------------------------------------------------------------
Total reads 0 0 0 0 0 0 70600388 0
Reads wo qual 0 0 0 0 0 0 0 0
Used reads 0 0 0 0 0 0 70600385 0
Avg tot rlen 0 0 0 0 0 0 300 0
Avg rlen used 0 0 0 0 0 0 263 0
W/o clips 0 0 0 0 0 0 0 0
Solexa total bases: 21183687735 used bases in used reads: 18580649786
===========================================================================
Sorting reads ... done.
Tmp directory is not on a NFS mount, good.
PRED MAXTID 43084013
Hash analysis for proposed cutbacks:Localtime: Sat Oct 25 15:09:06 2014
Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Flushing buffers to disk:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Localtime: Sat Oct 25 16:40:32 2014
Analysing hstat files:
[0%]
Other related posts:
