[mira_talk] Re: Strand FLAG error in SAM output from MIRA 4.0 miraconvert?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 17 Feb 2014 16:51:18 +0100 (CET)
> On February 17, 2014 at 4:05 PM Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx> wrote:
> I think there is a problem in the MIRA 4.0 SAM output with FLAG bit
> fields 0x10 and 0x20 (partner read's strand) sometimes being wrong,
> giving bad FLAG value pairs like 83 and 131, or 99 and 179.
IcanhazMAFplease? It's easier to track down problems on a live data set.
Related: how did you find those problems? I should take up a similar toolset to
spot potential problems earlier.
B.
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