[mira_talk] Re: Solexa seq assembly
- From: Jeremiah Davie <jdavie@xxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 29 Mar 2010 15:15:47 -0400
Raja,
Whenever I see that error, it is because I made a typo in naming
the files or in the project name. Double-check the names and then
double check the naming of the files to ensure they are consistent
with the naming in the manual. That generally solves 99% of those
errors; if it doesn't, then I'd double check my data to make sure it
was formatted appropriately (I've never had a reason to work with
fastq, but I understand there are several different versions depending
on the age of the Solexa platform and each is just slightly
different....... anyone else care to confirm that?). I *believe* the
latest version of MIRA handles all versions, but I've yet to look into
it in detail as I don't currently have any Solexa/Illumina data. I
hope this helps! - Jeremiah
On Mar 29, 2010, at 11:09 AM, Ragupathy, Raja wrote:
Dear all,
I just started working with Mira. When I want to do denovo genome
assembly of solexa short reads (fastq files), MIRA gives the error
message-‘program aborted due to error in input data or
parametrisation.
Could you please advice?
Thanks,
Raja
Raja Ragupathy PhD,
Post-Doctoral Fellow
Genomics and Sequencing labs,
(Dr.Sylvie Cloutier’ labs)
AAFC-Cereal Research Centre
Winnipeg, Manitoba
Canada R3T2M9
Phone: 204-983 8194
E-mail: ragupathyr@xxxxxxxxx
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