[mira_talk] RE Re: RE Re: batch processing multiple assembly jobs

  • From: Jorge.DUARTE@xxxxxxxxxxxx
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 4 Mar 2010 10:05:32 +0100

>   --job=genome -SK:mnr=yes:nrr=10:mhpr=50
> 
> allow do get you going?

I'll try this.

> Ummm ... is mapping a problem? It's "the easiest" part (I think) as it 
needs 
> to track only minimal info for repeats.

That's true, i just put mapping in order to be complete, but it's not my 
main issue.

> You'd get pretty crazy seeing the output. Furthermore, the things are in 

> change over time as I sometimes adapt to new situations. The way it 
works a 
> the moment is a whole cascade of rules adding to one another or 
overwriting 
> parameters set earlier. However, you can easily do this by changing one 
line 
> in the code.

Ok, well, never mind, i understand that there are many other things in 
your todo list more
important than that to do.

Cheers,
jorge.

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  • » [mira_talk] RE Re: RE Re: batch processing multiple assembly jobs - Jorge . DUARTE