[mira_talk] Re: Question regarding mrpc
- From: Torben Nielsen <torben@xxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sun, 17 Nov 2013 21:04:33 -1000
>>
>> I understand MIRA to be capable of hybrid assembly. That is, it can assemble
>> 454 reads along with Solexa, Sanger, etc. But I do not understand how that
>> works with mrpc being a technology specific parameter. What would happen
>> during an assembly where a read from a 454 assembly combined with a Solexa
>> read to form a contig of length two with mrpc set to 2 for 454 but to
>> something else - say 3 - for Solexa?
>
> That contig would be thrown away.
>
But if I had mrpc=2 for 454 and mrpc=2 for Solexa both, the contig would be
kept?
Thanks, Torben
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