[mira_talk] Re: Problem with assembly Illumina paired-end sequences
- From: Chris Hoefler <hoeflerb@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 10 Feb 2014 14:15:21 -0600
This may be a problem with NFS. I usually use -DI:trt to specify a local
storage for the tmp files. Rapidly reading/writing GBs of many small files
can tax the file server quite a bit.
On Mon, Feb 10, 2014 at 12:53 PM, Bastien Chevreux <bach@xxxxxxxxxxxx>wrote:
> On 10 Feb 2014, at 17:20 , Camila M. <kamynz16@xxxxxxxxx> wrote:
> > The full path to my directory is
> /home/ABTLUS/maria.villa/RNASeq_Pseudozyma/read_by_contig/docu_read_by_contig,
> and MIRA is installed on /progs/users/mira_4.0_linux-gnu_x86_64_static/.
>
> So with >700GiB free there really should be enough space.
>
> If you run that specific job again (with the same manifest), dies the same
> problem happen again?
>
> B.
>
>
>
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--
Chris Hoefler, PhD
Postdoctoral Research Associate
Straight Lab
Texas A&M University
2128 TAMU
College Station, TX 77843-2128
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