Hello,
I work with Pacbio data, and I'm trying to use mirabait
(mira_4.0.2_linux-gnu_x86_64_static).
I am using the following command:
./mirabait -k 31 1 -n bait.fasta file.R1.fastq output.fastq
And I'm having the following error message:
Fatal error (may be due to problems of the input data or parameters):
**************************************************
******************************
* Read *
* M160214_080210_42244_c100950862550000001823215806251617_s1_p0 / 1714 /
0_30019 *
* Is 30019 bp long and Thus longer than SKIM3_MAXREADSIZEALLOWED (29900) *
* Bases. Skim can not handle que, sorry. *
**************************************************
******************************
-> Thrown: void Skim :: transformSeqToVariableHash (...)
-> Caught: main
Aborting process, probably due to error in the input data or parametrisation.
Please check the output log for more information.
For help, please write a mail to the talk mailing list crosshairs.
Subscribing / unsubscribing to aim talk, see:
//www.freelists.org/list/mira_talk
CWD: /media/hd_externo_3/genoma_carol/mira_4.0.2_linux-gnu_x86_64_static/bin
Thank you for noticing que this is * NOT * the crash, but the
controlled program stop.
I wonder if there is any way to fix this error.
Thanks
Livia Maria Franceschini
Tecnologia da Informação
ESALQ/USP
Tel: (019) 3429-4248
