[mira_talk] Re: Mate-pairs with MiSeq for MIRA
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sun, 1 Sep 2013 00:04:00 +0200
On Aug 31, 2013, at 23:57 , Adrian Pelin <apelin20@xxxxxxxxx> wrote:
> Anyone have any idea how to guess the adaptor of the mate pairs? I looked
> through my documents and couldn't find it.
If it's an adaptor MIRA knows, simply put 100k or 200k reads through the
preprocessing pipeline of MIRA (-AS:nop=0) and then consult the clipping info
file in the tmp directory: will have clipped the adaptors and tell you what if
found there.
B.
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