[mira_talk] Re: MIRA vs Newbler (454 est's)
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 26 Jul 2011 00:44:50 +0200
On Jul 26, 2011, at 0:35 , Diogo Santos wrote:
> I think you hit the problem. My organism is a cross between two species of
> plants and thus may be a great allelic diversity. But this explains the big
> difference between MIRA and Newbler 2.5? Is it possible to rely on the
> results of MIRA or in this case it is preferable to change parameters?
> Sorry for the insistence ...
Well, I trust MIRA most of the time ... if I don't catch it doing some foolish
things that is.
In your case, I'd take a couple of well know genes and look in a finishing
program what MIRA did and what Newbler did. You need to get a feeling for how
the programs behave. “†rust“ is probably misplaced here ...
B.
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