[mira_talk] For miraSearchESTSNPs on 1 strain, could SROc and SIOc considered as SAOc?

From: Xiaomei Wu <wuxm07@xxxxxxxxx>
To: mira_talk@xxxxxxxxxxxxx
Date: Wed, 3 Mar 2010 17:45:17 -0500

Hi all,

I ran miraSearchESTSNPs on wheat 454 Titanium EST dataset which is only for
1 strain.
In step 2, I considered the union of pristine transcripts in "default' and
"remain" folders as my finally assembled transcripts (conding exisitng
proteins).

In step 3, I found the consensus sequences may be assembled from step-2
"default" and "remain" pristine transcripts. Because of the remain
transcripts, the detected SNPs in these consensus sequences have 'SROc' /
'SIOc' types. Because the input EST dataset is in 1 strain, could I consider
the 'SROc' and 'SIOc' SNPs the same as 'SAOc', and used the three types in
analysis.

Thank you.
Xiaomei

[mira_talk] For miraSearchESTSNPs on 1 strain, could SROc and SIOc considered as SAOc?

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