Hi,
I am emailing you because I'm having a couple of separate issues with
running MIRA and Mitobim. First is that the genomes aren't being assembled
due to not being able to determine the filetype of my reference genome.
Second is that I later added the "CL:pec=yes" command to trim the raw
reads, but that went unrecognized as well. It might just be due to
placement within the command, but any help would be appreciated. I should
add that this is to assemble rodent mitochondrial genomes, and my script,
as well as both error files, are attached below. Any help would be greatly
appreciated and I hope to hear from you soon.
Sincerely,
--
Kevin A.M. Sullivan
Graduate Research & Teaching Assistant
Biological Sciences
Texas Tech University
Lubbock, Texas 79409
Attachment:
Mbrandt_raw.o3577049
Description: Binary data
Attachment:
Mbrandt_raw.o3578519
Description: Binary data
Attachment:
raw_mitobim_Mbrandtii.sh
Description: Bourne shell script
