Your job is being killed on the cluster, probably because you have exceeded
some sort of resource usage limit. I would consult with your cluster
administrator to try to find the source of the problem. You may need to
submit to a high memory node and/or use a job submission switch that
reserves the memory needed for your task.
On Mon, Aug 10, 2015 at 8:16 AM, Elton Vasconcelos <eltonjrv@xxxxxxxxx>
wrote:
Hello Mira folks,
Could you guys help me with the error message I'm getting running mira
onto a cluster?
I have mira working fine on a multi-core single machine server.
Nevertheless, on a cluster, that uses "slurm" job management system, mira
stops while loading the fastq files (during the zlib warning message).
################################################
[erv3@login3 assembly-1stTrial]$ tail slurm-42733.out
Tmp directory is not on a NFS mount, good.
Localtime: Mon Aug 3 16:44:27 2015
Loading reads from ../all_R1-trimmed_paired.fastq type fastq
Localtime: Mon Aug 3 16:44:27 2015
Loading data from FASTQ file: ../all_R1-trimmed_paired.fastq
(sorry, no progress indicator for that, possible only with zlib >=1.34)
Failure, wrapped MIRA process aborted.
################################################
My fastq files are not compressed; Any clue about why mira on the cluster
is stopping at this point?
Is the program supported to run on clusters?
My input data is the same I used on the single server that is working fine.
Thanks in advance for your attention,
Elton
--
Elton Vasconcelos, DVM, PhD
Post-doc at Verjovski-Almeida Lab
Department of Biochemistry - Institute of Chemistry
University of Sao Paulo, Brazil
