[mira_talk] Re: Doubts
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 8 Oct 2014 21:42:16 +0200
On 08 Oct 2014, at 14:53 , Bobby Paul <bobbypaul29@xxxxxxxxx> wrote:
> >In MIRA, each read is aligned only once.
> If so it means reads from tandem repeat regions as well as paralogue gene
> regions will make single conting right?
You’re talking about de-novo here, right? Maybe yes, maybe not: if the gene
copies are different enough or are short enough to be crossed by single reads
or paired reads, they will be in different contigs for sure.
> The fourth query was is there any chance to align single read in multiple
> location.
If this is about mapping: every read is mapped exactly once into the genome. If
several possibilities exist where to map, the reads are evenly distributed.
B.
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
