[mira_talk] Bug report mira verison 3.9.9
- From: John Nash <john.he.nash@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 10 Jan 2013 15:03:16 -0500
G'day all,
I am in the middle of an assembly of a 5 megabase bacterial pathogen, using
about 40-fold 454 and 70-fold illumina (paired end) reads. It's something we
have done 60 or 70 times.
As I was watching the output come scrolling by, a couple of hours into the
assembly, I noticed the following error message:
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 4930
a
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 5090
aapaaaast+aasppppatspppppaaaa+aap+aapp 1141313 pft 3688 / 603
[1861047] ppaaatas+taappaa++ppptapaapaapapppppp+a
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 4526
a+a+aaatsaasapapappaa 1141313 pft 3609 / 649
[1861053] aasat+pappaaapappa
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 4443
aaaaaasaapaaa++
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 4178
a+apps+aata+aasa+ttaasa+p+s 1141313 pft 1117 / 684
[1861062] atppaaaaspa+pp++aap+
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
current af size: 4731
aaaassaaassaaapaaassssssssssssasstss+s+s 1141313 pft 293082 / 383
[1861068] asssssssssstsssssssssstsssssssasaasss+asasasasts+ssassa+sass
1141315 pft 2 /
209
[1861071] s+tasss+sasssasaa+sssssassaastssassas++satsssssssstss+ssssss
1141315 pft 2 /
191
[1861077] aaatsssssssaasastasssssaatssssassssass+sssatsassatsasaassasa
1141315 pft 2 /
197
[1861078] sastttats+ttssstaaaaaaasa+sssssssssssssssass+sssssssapa+aaaa
1141316 pft 12
/ 202
[1861082] aaaaaaaaaaaaaasttaaaas
WARNING: contig did not put refid into affected reads. Please file a bug report
to
https://sourceforge.net/apps/trac/mira-assembler/
and please send a mail to
mira_talk@xxxxxxxxxxxxx
---
Just tell me what I need to do to help you, and I will send the appropriate
data.
John
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