[mira_talk] Re: Assembly after vector screening
- From: Nestor Zaburannyi <nestor@xxxxxxxxxxxxx>
- To: Bastien Chevreux <mira_talk@xxxxxxxxxxxxx>
- Date: Wed, 31 Aug 2011 14:04:30 +0200
Dear Bastien,
Version 3.4 final. Bacteria. 146 bp. Average coverage is 37. My vector is in my
vector.fasta, in fasta format. After the assembly i can not see any
blast hits for vector in contigs, though i did without msvs*
parameters = 1000.
> On Aug 31, 2011, at 12:33 , Nestor Zaburannyi wrote:
>> After the assembly of my organism that was sequenced from pool of cosmids, i
>> have thousands of UIPACs and repeats. Can anyone recommend some adjustments
>> to make this assembly better?
> Version of MIRA? What kind of organism? Length of reads, average
> coverage? What's the content of your "vector.fasta"?
> The number of "SRMc" is somewhat disconcerting ...
> B.
Sincerely yours
Nestor
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
