[mira_talk] Re: 454 genome assembly
- From: Mihaela Angelova <mihaela.angelova@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 02 Oct 2009 11:27:29 +0200
Hi,
It'a about shotgun DNA sequencing on a bacteria with FLX and the size
genome is unknown, but it is estimated to be around 6Mbp. The expected
coverage is 22. There are no lower-case parts in the sequences and the
reads are not paired-end.
I have used the route shown in the walkthroughs (sff_extract-> mira)
and I got the same results.
Therefore, I attach the first 20k lines of the assembly log.
Thanks a lot to all of you who answered,
Mihaela
Zitat von Bastien Chevreux <bach@xxxxxxxxxxxx>:
On Donnerstag 01 Oktober 2009 Sven Klages wrote:
-notrim directs sffinfo to dump the key sequence (the very end of the
adaptor A, tcag) at the beginning
and obviously any untrimmed sequence at the end (3') of the sequence.
You still won't see the complete adaptor A :-)
Yeah, it's not stored in the SFF file.
Anyway, all this brought me to implement a new clipping function:
-CL:lowercase_clip
On by default for 454 data, off for all other. Sorry, no prize for guessing
what it does :-)
Regards,
Bastien
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This is MIRA V3rc3 (development version).
Please cite: Chevreux, B., Wetter, T. and Suhai, S. (1999), Genome Sequence
Assembly Using Trace Signals and Additional Sequence Information.
Computer Science and Biology: Proceedings of the German Conference on
Bioinformatics (GCB) 99, pp. 45-56.
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This ensures that requests don't get lost.
Running in 64 bit mode.
Compiled in boundtracking mode.
Compiled in bugtracking mode.
Parsing parameters: -fasta -project=dsm6611 -job=denovo,genome,accurate,454
-noclipping
Using quickmode switch -noclipping :
SANGER_SETTINGS
-CL:msvs=no:pvlc=no:qc=no:bsqc=no:mbc=no:emlc=no:emrc=no:cpat=no
454_SETTINGS
-CL:msvs=no:pvlc=no:qc=no:bsqc=no:mbc=no:emlc=no:emrc=no:cpat=no
SOLEXA_SETTINGS
-CL:msvs=no:pvlc=no:qc=no:bsqc=no:mbc=no:emlc=no:emrc=no:cpat=no
SOLID_SETTINGS
-CL:msvs=no:pvlc=no:qc=no:bsqc=no:mbc=no:emlc=no:emrc=no:cpat=no
Parameters parsed without error, perfect.
------------------------------------------------------------------------------
Parameter settings seen for:
Sanger data (also common parameters), 454 data
Used parameter settings:
General (-GE):
Project name in (proin) : dsm6611
Project name out (proout) : dsm6611
Number of threads (not) : 2
Automatic memory management (amm) : yes
GiB memory forbidden (gbmf) : [san] 1
[454] 1
Max. process size (mps) : [san] 0
[454] 0
Keep contigs in memory (kcim) : no
EST SNP pipeline step (esps) : 1
Use template information (uti) : [san] yes
[454] yes
Template insert size minimum (tismin): [san] -1
[454] -1
Template insert size maximum (tismax): [san] -1
[454] -1
Colour reads by hash frequency (crhf) : yes
Load reads options (-LR):
Load sequence data (lsd) : [san] no
[454] yes
File type (ft) : [san] fasta
[454] fasta
External quality (eq) : from SCF (scf)
Ext. qual. override (eqo) : no
Discard reads on e.q. error (droeqe): no
Solexa scores in qual file (ssiqf) : yes
FASTQ qual offset (fqqo) : [san] 0
[454] 0
Wants quality file (wqf) : [san] yes
[454] yes
Read naming scheme (rns) : [san] Sanger Institute
(sanger)
[454] forward/reverse
(fr)
Merge with XML trace info (mxti) : [san] no
[454] yes
Filecheck only (fo) : no
Assembly options (-AS):
Number of passes (nop) : 5
Skim each pass (sep) : yes
Maximum number of RMB break loops (rbl) : 3
Minimum read length (mrl) : [san] 80
[454] 40
Base default quality (bdq) : [san] 10
[454] 10
Enforce presence of qualities (epoq) : [san] yes
[454] yes
Automatic repeat detection (ard) : yes
Coverage threshold (ardct) : [san] 2
[454] 2
Minimum length (ardml) : [san] 400
[454] 200
Grace length (ardgl) : [san] 40
[454] 20
Use uniform read distribution (urd) : yes
Start in pass (urdsip) : 4
Cutoff multiplier (urdcm) : [san] 1.5
[454] 1.5
Keep long repeats separated (klrs) : no
Spoiler detection (sd) : yes
Last pass only (sdlpo) : yes
Use genomic pathfinder (ugpf) : yes
Use emergency search stop (uess) : yes
ESS partner depth (esspd) : 500
Use emergency blacklist (uebl) : yes
Use max. contig build time (umcbt) : no
Build time in seconds (bts) : 10000
Strain and backbone options (-SB):
Load straindata (lsd) : no
Load backbone (lb) : no
Start backbone usage in pass (sbuip) : 3
Backbone file type (bft) : fasta
Backbone base quality (bbq) : 30
Backbone strain name (bsn) :
Force for all (bsnffa) : no
Backbone rail from strain (brfs) :
Backbone rail length (brl) : 0
Backbone rail overlap (bro) : 0
Also build new contigs (abnc) : yes
Dataprocessing options (-DP):
Use read extensions (ure) : [san] yes
[454] no
Read extension window length (rewl) : [san] 30
[454] 15
Read extension w. maxerrors (rewme) : [san] 2
[454] 2
First extension in pass (feip) : [san] 0
[454] 0
Last extension in pass (leip) : [san] 0
[454] 0
Clipping options (-CL):
Merge with SSAHA vector screen (msvs) : [san] no
[454] no
Gap size (msvsgs) : [san] 10
[454] 8
Max front gap (msvsmfg) : [san] 30
[454] 8
Max end gap (msvsmeg) : [san] 60
[454] 12
Strict front clip (msvssfc) : [san] 0
[454] 0
Strict end clip (msvssec) : [san] 0
[454] 0
Possible vector leftover clip (pvlc) : [san] no
[454] no
maximum len allowed (pvcmla) : [san] 18
[454] 18
Quality clip (qc) : [san] no
[454] no
Minimum quality (qcmq) : [san] 20
[454] 20
Window length (qcwl) : [san] 30
[454] 30
Bad stretch quality clip (bsqc) : [san] no
[454] no
Minimum quality (bsqcmq) : [san] 20
[454] 5
Window length (bsqcwl) : [san] 30
[454] 20
Masked bases clip (mbc) : [san] no
[454] no
Gap size (mbcgs) : [san] 20
[454] 5
Max front gap (mbcmfg) : [san] 40
[454] 12
Max end gap (mbcmeg) : [san] 60
[454] 12
Clip poly A/T at ends (cpat) : [san] no
[454] no
Keep poly-a signal (cpkps) : [san] no
[454] no
Minimum signal length (cpmsl) : [san] 12
[454] 12
Max errors allowed (cpmea) : [san] 1
[454] 1
Max gap from ends (cpmgfe) : [san] 9
[454] 9
Ensure minimum left clip (emlc) : [san] no
[454] no
Minimum left clip req. (mlcr) : [san] 25
[454] 4
Set minimum left clip to (smlc) : [san] 30
[454] 4
Ensure minimum right clip (emrc) : [san] no
[454] no
Minimum right clip req. (mrcr) : [san] 10
[454] 10
Set minimum right clip to (smrc) : [san] 20
[454] 15
Propose end clips (pec) : yes
Bases per hash (pecbph) : 27
Parameters for SKIM algorithm (-SK):
Number of threads (not) : 2
Bases per hash (bph) : 21
Hash save stepping (hss) : 1
Percent required (pr) : [san] 70
[454] 80
Max hits per read (mhpr) : 2000
Mask nasty repeats (mnr) : yes
Nasty repeat ratio (nrr) : 100
Max. megahub ratio (mmhr) : 0
Max hashes in memory (mhim) : 15000000
MemCap: hit reduction (mchr) : 2048
Pathfinder options (-PF):
Use quick rule (uqr) : [san] yes
[454] yes
Quick rule min len 1 (qrml1) : [san] 200
[454] 80
Quick rule min sim 1 (qrms1) : [san] 90
[454] 90
Quick rule min len 2 (qrml2) : [san] 100
[454] 60
Quick rule min sim 2 (qrms2) : [san] 95
[454] 95
Backbone quick overlap min len (bqoml) : [san] 150
[454] 80
Align parameters for Smith-Waterman align (-AL):
Bandwidth in percent (bip) : [san] 20
[454] 20
Bandwidth max (bmax) : [san] 130
[454] 80
Bandwidth min (bmin) : [san] 25
[454] 20
Minimum score (ms) : [san] 30
[454] 15
Minimum overlap (mo) : [san] 15
[454] 40
Minimum relative score in % (mrs) : [san] 80
[454] 80
Solexa_hack_max_errors (shme) : [san] 0
[454] 0
Extra gap penalty (egp) : [san] no
[454] yes
extra gap penalty level (egpl) : [san] low
[454] reject_codongaps
Max. egp in percent (megpp) : [san] 100
[454] 100
Contig parameters (-CO):
Name prefix (np) : dsm6611
Reject on drop in relative alignment score in % (rodirs) : [san] 25
[454] 30
Mark repeats (mr) : yes
Only in result (mroir) : no
Assume SNP instead of repeats (asir) : no
Minimum reads per group needed for tagging (mrpg) : [san] 2
[454] 4
Minimum neighbour quality needed for tagging (mnq) : [san] 20
[454] 20
Minimum Group Quality needed for RMB Tagging (mgqrt) : [san] 30
[454] 25
End-read Marking Exclusion Area in bases (emea) : [san] 25
[454] 10
Also mark gap bases (amgb) : [san] yes
[454] no
Also mark gap bases - even multicolumn (amgbemc) : [san] yes
[454] yes
Also mark gap bases - need both strands (amgbnbs): [san] yes
[454] yes
Force non-IUPAC consensus per sequencing type (fnicpst) : [san] no
[454] no
Merge short reads (msr) : [san] no
[454] no
Gap override ratio (gor) : [san] 66
[454] 66
Edit options (-ED):
Automatic contig editing (ace) : [san] no
[454] yes
Sanger only:
Strict editing mode (sem) : no
Confirmation threshold in percent (ct) : 50
Directories (-DI):
When loading EXP files :
When loading SCF files :
For writing result files : dsm6611_d_results
For writing result info files : dsm6611_d_info
For writing log files : dsm6611_d_log
File names (-FN):
When loading sequences from FASTA : [san]
dsm6611_in.sanger.fasta
[454]
dsm6611_in.454.fasta
When loading qualities from FASTA quality : [san]
dsm6611_in.sanger.fasta.qual
[454]
dsm6611_in.454.fasta.qual
When loading sequences from FASTQ : [san]
dsm6611_in.sanger.fastq
[454]
dsm6611_in.454.fastq
When loading project from CAF : dsm6611_in.sanger.maf
When loading project from MAF (disabled) :
When loading EXP fofn : dsm6611_in.fofn
When loading project from PHD : dsm6611_in.phd.1
When loading strain data : dsm6611_straindata_in.txt
When loading XML trace info files : [san]
dsm6611_traceinfo_in.sanger.xml
[454]
dsm6611_traceinfo_in.454.xml
When loading SSAHA vector screen results :
dsm6611_ssahavectorscreen_in.txt
When loading backbone from CAF : dsm6611_backbone_in.caf
When loading backbone from GenBank : dsm6611_backbone_in.gbf
When loading backbone from FASTA : dsm6611_backbone_in.fasta
Output files (-OUTPUT/-OUT):
Save simple singlets in project (sssip) : [san] no
[454] no
Save tagged singlets in project (stsip) : [san] yes
[454] yes
Remove rollover logs (rrol) : yes
Remove log directory (rld) : no
Result files:
Saved as CAF (orc) : yes
Saved as FASTA (orf) : yes
Saved as GAP4 (directed assembly) (org) : no
Saved as phrap ACE (ora) : yes
Saved as HTML (orh) : no
Saved as Transposed Contig Summary (ors) : yes
Saved as simple text format (ort) : no
Saved as wiggle (orw) : yes
Temporary result files:
Saved as CAF (otc) : yes
Saved as CAF (otm) : no
Saved as FASTA (otf) : no
Saved as GAP4 (directed assembly) (otg) : no
Saved as phrap ACE (ota) : no
Saved as HTML (oth) : no
Saved as Transposed Contig Summary (ots) : no
Saved as simple text format (ott) : no
Extended temporary result files:
Saved as CAF (oetc) : no
Saved as FASTA (oetf) : no
Saved as GAP4 (directed assembly) (oetg) : no
Saved as phrap ACE (oeta) : no
Saved as HTML (oeth) : no
Save also singlets (oetas) : no
Alignment output customisation:
TEXT characters per line (tcpl) : 60
HTML characters per line (hcpl) : 60
TEXT end gap fill character (tegfc) :
HTML end gap fill character (hegfc) :
File / directory output names:
CAF : dsm6611_out.caf
MAF : dsm6611_out.maf
FASTA : dsm6611_out.unpadded.fasta
FASTA quality : dsm6611_out.unpadded.fasta.qual
FASTA (padded) : dsm6611_out.padded.fasta
FASTA qual.(pad): dsm6611_out.padded.fasta.qual
GAP4 (directory): dsm6611_out.gap4da
ACE : dsm6611_out.ace
HTML : dsm6611_out.html
Simple text : dsm6611_out.txt
TCS overview : dsm6611_out.tcs
Wiggle : dsm6611_out.wig
------------------------------------------------------------------------------
Creating directory dsm6611_d_log ... done.
Creating directory dsm6611_d_results ... done.
Creating directory dsm6611_d_info ... done.
Localtime: Thu Oct 1 17:42:21 2009
Loading data (454) from FASTA files,
Counting sequences in FASTA file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Found 605864 sequences.
454 will load 605864 reads.
Longest Sanger: 0
Longest 454: 680
Longest Solexa: 0
Longest Solid: 0
Longest overall: 680
Total reads to load: 605864
Reserving space for reads (this may take a while)
Reserved space for 605874 reads.
Loading data (454) from FASTA files,
Counting sequences in FASTA file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Found 605864 sequences.
Loading data from FASTA file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Loading quality data from FASTA quality file dsm6611_in.454.fasta.qual:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Done.
Loaded 605864 reads, 605864 of which have quality accounted for.
Loaded 605864 454 reads.
Total reads loaded: 605864
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77938220 kB
Buffers: 151916 kB
Cached: 2178360 kB
SwapCached: 0 kB
Active: 3849204 kB
Inactive: 563564 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77938220 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 783160 kB
Writeback: 0 kB
AnonPages: 2082528 kB
Mapped: 47444 kB
Slab: 121176 kB
PageTables: 16184 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3069264 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 1599448 kB
VmSize: 1574304 kB
VmLck: 0 kB
VmHWM: 1596252 kB
VmRSS: 1571232 kB
VmData: 1570016 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3092 kB
StaBrk: 00a55000 kB
Brk: 6a8ea000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1569722872 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 24 B 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 0 24 B 0 B 0 B
AS_clipright: 0 24 B 0 B 0 B
AS_used_ids: 0 24 B 0 B 0 B
AS_multicopies: 0 24 B 0 B 0 B
AS_hasmcoverlaps: 0 24 B 0 B 0 B
AS_maxcoveragereached: 0 24 B 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 0 24 B 0 B 0 B
AS_isdebris: 0 24 B 0 B 0 B
AS_needalloverlaps: 0 40 B 0 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 1 48 B 0 B 0 B
Total: 1569723680 (1.5 GiB)
================================================================================
Localtime: Thu Oct 1 17:43:35 2009
Merging data from XML trace info file dsm6611_traceinfo_in.454.xml ...Num
reads: 605864
Building hash table ... done.
Localtime: Thu Oct 1 17:43:54 2009
Generated 605864 unique template ids for 605864 valid reads.
Done merging XML data, matched 605864 reads.
Checking reads for trace data:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
No SCF data present in any read, automatic contig editing for Sanger data is
now switched off.
605864 reads with valid data for assembly.
Localtime: Thu Oct 1 17:44:00 2009
Generated 605864 unique template ids for 605864 valid reads.
No useful template information found, template routines will not be used.
Localtime: Thu Oct 1 17:44:04 2009
Generated 0 unique strain ids for 605864 reads.
Strain "default" has 605864 reads.
Have read pool with 605864 reads.
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 Solexa SOLiD
---------------------------------
Total reads 0 605864 0 0
Reads wo qual 0 0 0 0
Used reads 0 605793 0 0
Avg len used 0 226 0 0
With strain 0 0 0 0
W/o clips 0 184781 0 0
===========================================================================
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 Solexa SOLiD
---------------------------------
Total reads 0 605864 0 0
Reads wo qual 0 0 0 0
Used reads 0 605793 0 0
Avg len used 0 226 0 0
With strain 0 0 0 0
W/o clips 0 184781 0 0
===========================================================================
dmi as_init 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77682472 kB
Buffers: 152000 kB
Cached: 2191472 kB
SwapCached: 0 kB
Active: 4189668 kB
Inactive: 478180 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77682472 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 779684 kB
Writeback: 0 kB
AnonPages: 2324608 kB
Mapped: 47604 kB
Slab: 121524 kB
PageTables: 16696 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3311368 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 1894788 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 1891792 kB
VmRSS: 1813452 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1569722872 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 24 B 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 0 24 B 0 B 0 B
AS_clipright: 0 24 B 0 B 0 B
AS_used_ids: 0 24 B 0 B 0 B
AS_multicopies: 0 24 B 0 B 0 B
AS_hasmcoverlaps: 0 24 B 0 B 0 B
AS_maxcoveragereached: 0 24 B 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 0 24 B 0 B 0 B
AS_isdebris: 0 24 B 0 B 0 B
AS_needalloverlaps: 0 40 B 0 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 2 80 B 0 B 0 B
Total: 1569723712 (1.5 GiB)
================================================================================
dmi as_init 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77682456 kB
Buffers: 152000 kB
Cached: 2191472 kB
SwapCached: 0 kB
Active: 4189668 kB
Inactive: 478180 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77682456 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 779684 kB
Writeback: 0 kB
AnonPages: 2324608 kB
Mapped: 47604 kB
Slab: 121524 kB
PageTables: 16696 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3311368 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 1894788 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 1891792 kB
VmRSS: 1813464 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1569722872 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 2 80 B 0 B 0 B
Total: 1616981128 (1.5 GiB)
================================================================================
Hash analysis for proposed cutbacks:Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Analysing hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Hash statistics:
=========================================================
Measured avg. frequency coverage: 23
Deduced thresholds:
-------------------
Min normal cov: 11
Max normal cov: 35
Repeat cov: 44
Crazy cov: 184
Mask cov: 0
Repeat ratio histogram:
-----------------------
0 1821534
1 9373782
2 365324
3 57004
4 11212
5 4580
6 6564
7 5942
8 842
9 790
10 562
11 928
12 738
13 1000
14 538
15 528
16 1546
17 904
18 722
19 462
20 392
21 254
22 346
23 454
24 490
25 198
26 10
27 12
28 12
29 14
30 8
31 14
32 12
33 10
34 8
35 16
36 2
37 2
38 6
39 6
41 6
43 4
44 4
45 8
46 2
47 2
50 6
51 2
52 4
53 4
54 8
55 2
56 8
58 2
59 2
60 6
64 2
68 2
72 2
73 4
74 2
82 2
83 10
86 2
87 2
95 2
96 2
97 4
99 2
=========================================================
Assigning values:
Localtime: Thu Oct 1 17:45:47 2009
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Localtime: Thu Oct 1 17:46:58 2009
Looking for proposed cutbacks ... done.
Performed clips:
Num reads cliped left: 17452
Num reads cliped right: 78373
Num reads completely killed: 2868
Total bases clipped : 1176646
Hash analysis for proposed cutbacks:Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Analysing hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Hash statistics:
=========================================================
Measured avg. frequency coverage: 23
Deduced thresholds:
-------------------
Min normal cov: 11
Max normal cov: 35
Repeat cov: 44
Crazy cov: 184
Mask cov: 0
Repeat ratio histogram:
-----------------------
0 1746464
1 9368686
2 365308
3 56966
4 11176
5 4568
6 6558
7 5942
8 842
9 788
10 562
11 928
12 738
13 1000
14 538
15 528
16 1546
17 904
18 722
19 462
20 392
21 254
22 346
23 454
24 490
25 198
26 10
27 12
28 12
29 14
30 8
31 14
32 12
33 10
34 8
35 16
36 2
37 2
38 6
39 6
41 6
43 4
44 4
45 8
46 2
47 2
50 6
51 2
52 4
53 4
54 8
55 2
56 8
58 2
59 2
60 6
64 2
68 2
72 2
73 4
74 2
82 2
83 10
86 2
87 2
95 2
96 2
97 4
99 2
=========================================================
Assigning values:
Localtime: Thu Oct 1 17:48:58 2009
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Localtime: Thu Oct 1 17:50:09 2009
Looking for proposed cutbacks ... done.
Performed clips:
Num reads cliped left: 155
Num reads cliped right: 0
Num reads completely killed: 6
Total bases clipped : 4703
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 Solexa SOLiD
---------------------------------
Total reads 0 605864 0 0
Reads wo qual 0 0 0 0
Used reads 0 602919 0 0
Avg len used 0 225 0 0
With strain 0 0 0 0
W/o clips 0 153246 0 0
===========================================================================
dmi pre 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77451932 kB
Buffers: 160848 kB
Cached: 2394720 kB
SwapCached: 0 kB
Active: 4391168 kB
Inactive: 489000 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77451932 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 773492 kB
Writeback: 0 kB
AnonPages: 2324668 kB
Mapped: 47840 kB
Slab: 138324 kB
PageTables: 16868 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3310732 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 92%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2257380 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 2254652 kB
VmRSS: 1813604 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1569722872 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 2 80 B 0 B 0 B
Total: 1616981128 (1.5 GiB)
================================================================================
Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Analysing hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Hash statistics:
=========================================================
Measured avg. frequency coverage: 24
Deduced thresholds:
-------------------
Min normal cov: 12
Max normal cov: 36
Repeat cov: 46
Crazy cov: 192
Mask cov: 2400
Repeat ratio histogram:
-----------------------
0 1566336
1 9436000
2 375044
3 59954
4 11976
5 5076
6 7440
7 5752
8 956
9 812
10 610
11 1064
12 916
13 964
14 612
15 608
16 1632
17 846
18 812
19 370
20 438
21 272
22 410
23 492
24 510
25 112
26 18
27 24
28 16
29 42
30 10
31 24
32 18
33 10
34 16
35 36
36 16
37 10
38 4
39 6
40 16
41 6
42 12
43 2
44 8
46 4
47 20
48 2
49 12
50 4
51 4
52 6
53 10
54 14
55 4
56 8
57 10
59 12
61 2
65 2
67 2
68 4
69 2
70 4
71 2
73 4
75 2
77 6
79 2
80 2
82 6
83 2
84 8
85 4
87 2
88 4
90 4
91 4
95 2
96 4
97 6
98 6
99 2
100 4
102 4
103 2
104 2
106 2
107 2
108 2
110 6
112 2
170 2
171 2
172 2
201 2
246 2
247 2
250 4
=========================================================
Assigning values:
Localtime: Thu Oct 1 17:51:53 2009
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Buntifying reads (this may take a while) ... done.
dmi pre 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77442616 kB
Buffers: 165296 kB
Cached: 2393772 kB
SwapCached: 0 kB
Active: 4394284 kB
Inactive: 489808 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77442616 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 689464 kB
Writeback: 0 kB
AnonPages: 2324680 kB
Mapped: 47832 kB
Slab: 145908 kB
PageTables: 16604 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3310736 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2267328 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 2264620 kB
VmRSS: 1813632 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 3 112 B 0 B 0 B
Total: 1687197616 (1.6 GiB)
================================================================================
dmi pre 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77443012 kB
Buffers: 165296 kB
Cached: 2393772 kB
SwapCached: 0 kB
Active: 4394284 kB
Inactive: 489808 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77443012 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 689456 kB
Writeback: 0 kB
AnonPages: 2324680 kB
Mapped: 47832 kB
Slab: 145628 kB
PageTables: 16604 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3310736 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2267328 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 2264620 kB
VmRSS: 1813632 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 3 112 B 0 B 0 B
Total: 1687197616 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 17:53:17 2009
Searching for possible overlaps
dmi fpo 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77442640 kB
Buffers: 165308 kB
Cached: 2394304 kB
SwapCached: 0 kB
Active: 4394284 kB
Inactive: 489812 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77442640 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 690000 kB
Writeback: 0 kB
AnonPages: 2324680 kB
Mapped: 47832 kB
Slab: 145628 kB
PageTables: 16604 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3310736 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2267328 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 2264620 kB
VmRSS: 1813640 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 3 112 B 0 B 0 B
Total: 1687197616 (1.6 GiB)
================================================================================
dmi fpo 05
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 77442640 kB
Buffers: 165308 kB
Cached: 2394132 kB
SwapCached: 0 kB
Active: 4394284 kB
Inactive: 489820 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 77442640 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 689824 kB
Writeback: 0 kB
AnonPages: 2324680 kB
Mapped: 47848 kB
Slab: 145640 kB
PageTables: 16604 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3310736 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2267328 kB
VmSize: 1816316 kB
VmLck: 0 kB
VmHWM: 2264620 kB
VmRSS: 1813640 kB
VmData: 1812028 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3564 kB
StaBrk: 00a55000 kB
Brk: 79541000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 0 24 B 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 3 112 B 0 B 0 B
Total: 1687197616 (1.6 GiB)
================================================================================
:
Localtime: Thu Oct 1 17:53:18 2009
Now running threaded and partitioned skimmer with 10 partitions in 2 threads:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done.
Skim summary:
accepted: 19376990
possible: 61661234
permbans: 0
Hits chosen: 19376990
Localtime: Thu Oct 1 18:05:18 2009
Total megahubs: 0
dmi fpo 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76554856 kB
Buffers: 167636 kB
Cached: 2993772 kB
SwapCached: 0 kB
Active: 4971612 kB
Inactive: 792324 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76554856 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 840828 kB
Writeback: 0 kB
AnonPages: 2602160 kB
Mapped: 47908 kB
Slab: 151924 kB
PageTables: 17096 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3625252 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 93%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 2260848 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 2091268 kB
VmData: 2256560 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 4144 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 8 272 B 0 B 0 B
Total: 1689621232 (1.6 GiB)
================================================================================
Possible chimera : FHTFGA201DWJWW [5,243[ cut back to [5,176[
Possible chimera : FHTFGA201DR4AF [5,161[ cut back to [63,207[
Possible chimera : FHTFGA201D7DCA [5,237[ cut back to [5,145[
Possible chimera : FHTFGA201EAESR [5,268[ cut back to [5,209[
Possible chimera : FHTFGA201EW7L6 [5,236[ cut back to [103,236[
Possible chimera : FHTFGA201AJFAK [5,258[ cut back to [5,146[
Possible chimera : FHTFGA201D6R2V [5,259[ cut back to [5,187[
Possible chimera : FHTFGA201E0G42 [5,275[ cut back to [5,182[
Possible chimera : FHTFGA201BDT8I [5,235[ cut back to [5,179[
Possible chimera : FHTFGA201D93V3 [5,252[ cut back to [5,205[
Possible chimera : FHTFGA201DC6XX [5,258[ cut back to [5,208[
Possible chimera : FHTFGA201CV1YN [5,261[ cut back to [5,153[
Possible chimera : FHTFGA201DPL68 [5,242[ cut back to [5,162[
Possible chimera : FHTFGA201CD16X [5,259[ cut back to [5,146[
Possible chimera : FHTFGA201DC2PK [5,247[ cut back to [5,152[
Possible chimera : FHTFGA201CU1DX [5,273[ cut back to [5,215[
Possible chimera : FHTFGA201BF6N4 [5,258[ cut back to [5,153[
Possible chimera : FHTFGA201DG0D8 [5,229[ cut back to [5,171[
Possible chimera : FHTFGA201BK6FF [5,234[ cut back to [124,237[
Possible chimera : FHTFGA201CDPSU [5,149[ cut back to [5,77[
Possible chimera : FHTFGA201BEFD7 [5,263[ cut back to [5,213[
Possible chimera : FHTFGA201DJ1ZM [5,230[ cut back to [5,136[
Possible chimera : FHTFGA201EXWBX [5,245[ cut back to [5,139[
Possible chimera : FHTFGA201A80H5 [5,142[ cut back to [5,59[
Possible chimera : FHTFGA201EPBNE [5,254[ cut back to [5,199[
Possible chimera : FHTFGA201C5M30 [5,234[ cut back to [5,150[
Possible chimera : FHTFGA201A14XL [5,244[ cut back to [5,109[
Possible chimera : FHTFGA201ATO3F [5,261[ cut back to [5,201[
Possible chimera : FHTFGA201EJ0W6 [5,233[ cut back to [5,188[
Possible chimera : FHTFGA201EO5Y4 [5,263[ cut back to [5,144[
Possible chimera : FHTFGA201C9I5J [5,244[ cut back to [5,166[
Possible chimera : FHTFGA201EIP09 [5,263[ cut back to [98,265[
Possible chimera : FHTFGA201A2QLB [5,232[ cut back to [81,232[
Possible chimera : FHTFGA201EBV92 [5,245[ cut back to [84,245[
Possible chimera : FHTFGA201DZCS5 [5,256[ cut back to [5,131[
Possible chimera : FHTFGA201EGWYB [26,236[ cut back to [127,240[
Possible chimera : FHTFGA201AV3S8 [5,260[ cut back to [5,199[
Possible chimera : FHTFGA201A9K5C [5,212[ cut back to [54,258[
Possible chimera : FHTFGA201A2XQO [5,240[ cut back to [5,172[
Possible chimera : FHTFGA201COOMI [5,252[ cut back to [5,140[
Possible chimera : FHTFGA201DDXQX [5,224[ cut back to [5,156[
Possible chimera : FHTFGA201C8GW0 [5,243[ cut back to [5,170[
Possible chimera : FHTFGA201E0W3C [5,258[ cut back to [5,156[
Possible chimera : FHTFGA201DWX6V [5,247[ cut back to [5,157[
Possible chimera : FHTFGA201ELYFM [5,247[ cut back to [5,189[
Possible chimera : FHTFGA201ES3K5 [5,243[ cut back to [5,179[
Possible chimera : FHTFGA201C28I9 [5,246[ cut back to [5,136[
Possible chimera : FHTFGA201DBKVE [5,250[ cut back to [71,252[
Possible chimera : FHTFGA201AG5BG [5,203[ cut back to [5,129[
Possible chimera : FHTFGA201ETSA8 [14,254[ cut back to [14,155[
Possible chimera : FHTFGA201DXBOM [5,245[ cut back to [5,153[
Possible chimera : FHTFGA201EKGG2 [5,243[ cut back to [5,173[
Possible chimera : FHTFGA201EC95X [5,278[ cut back to [5,212[
Possible chimera : FHTFGA201EBUVE [5,259[ cut back to [5,163[
Possible chimera : FHTFGA201B7R4V [5,250[ cut back to [5,187[
Possible chimera : FHTFGA201C8CEN [5,253[ cut back to [5,197[
Possible chimera : FHTFGA201BMOEB [5,237[ cut back to [5,184[
Possible chimera : FHTFGA201EK36N [5,237[ cut back to [5,188[
Possible chimera : FHTFGA201EJZGE [5,242[ cut back to [5,159[
Possible chimera : FHTFGA201A5ZFB [5,233[ cut back to [5,185[
Possible chimera : FHTFGA201DM5EO [5,236[ cut back to [120,237[
Possible chimera : FHTFGA201EEM87 [5,253[ cut back to [5,181[
Possible chimera : FHTFGA201DYFZ3 [5,242[ cut back to [5,190[
Possible chimera : FHTFGA201D8FRJ [5,256[ cut back to [5,203[
Possible chimera : FHTFGA201DXS3B [5,180[ cut back to [5,110[
Possible chimera : FHTFGA201EALVH [5,244[ cut back to [5,180[
Possible chimera : FHTFGA201C379I [34,251[ cut back to [96,251[
Possible chimera : FHTFGA201ARY82 [5,238[ cut back to [5,179[
Possible chimera : FHTFGA201A4VCC [5,240[ cut back to [5,186[
Possible chimera : FHTFGA201EMQ6J [7,295[ cut back to [7,248[
Possible chimera : FHTFGA201CDQJF [5,266[ cut back to [5,220[
Possible chimera : FHTFGA201BNAM8 [5,272[ cut back to [5,214[
Possible chimera : FHTFGA201BJ4IT [5,251[ cut back to [5,176[
Possible chimera : FHTFGA201ANHBY [5,244[ cut back to [70,244[
Possible chimera : FHTFGA201D8CUW [5,249[ cut back to [5,176[
Possible chimera : FHTFGA201A41DN [5,233[ cut back to [5,190[
Possible chimera : FHTFGA201D5AR8 [5,249[ cut back to [5,195[
Possible chimera : FHTFGA201DT5O6 [5,252[ cut back to [5,204[
Possible chimera : FHTFGA201ENBHT [5,257[ cut back to [5,185[
Possible chimera : FHTFGA201B5GOS [5,257[ cut back to [62,261[
Possible chimera : FHTFGA201EX7BO [5,247[ cut back to [5,134[
Possible chimera : FHTFGA201CIR0B [5,247[ cut back to [5,140[
Possible chimera : FHTFGA201DBWXV [5,237[ cut back to [5,162[
Possible chimera : FHTFGA201DEF57 [5,256[ cut back to [5,195[
Possible chimera : FHTFGA201CVZV0 [5,228[ cut back to [107,238[
Possible chimera : FHTFGA201A1OJD [5,251[ cut back to [5,206[
Possible chimera : FHTFGA201AP0RW [5,236[ cut back to [5,154[
Possible chimera : FHTFGA201DDFU3 [5,240[ cut back to [78,240[
Possible chimera : FHTFGA201D8AOJ [5,237[ cut back to [5,170[
Possible chimera : FHTFGA201CXW79 [5,270[ cut back to [5,160[
Possible chimera : FHTFGA201B2OH5 [5,270[ cut back to [5,224[
Possible chimera : FHTFGA201B00K2 [5,261[ cut back to [5,210[
Possible chimera : FHTFGA201DI0Z4 [5,264[ cut back to [5,159[
Possible chimera : FHTFGA201EHPSU [5,242[ cut back to [5,181[
Possible chimera : FHTFGA201E05W4 [5,243[ cut back to [5,134[
Possible chimera : FHTFGA201A76ZH [5,248[ cut back to [5,185[
Possible chimera : FHTFGA201C5K3E [5,264[ cut back to [5,204[
Possible chimera : FHTFGA201BJV04 [5,259[ cut back to [5,159[
Possible chimera : FHTFGA201DB8D4 [5,245[ cut back to [5,118[
Possible chimera : FHTFGA201AQSPR [5,257[ cut back to [5,192[
Possible chimera : FHTFGA201B97W9 [5,248[ cut back to [164,252[
Possible chimera : FHTFGA201DYWBG [5,255[ cut back to [63,255[
Possible chimera : FHTFGA201BYDD6 [5,258[ cut back to [5,182[
Possible chimera : FHTFGA201AME16 [5,113[ cut back to [5,74[
Possible chimera : FHTFGA201AN04H [5,260[ cut back to [5,143[
Possible chimera : FHTFGA201DV18O [5,250[ cut back to [5,148[
Possible chimera : FHTFGA201CHM8H [5,257[ cut back to [82,258[
Possible chimera : FHTFGA201AFEHR [5,236[ cut back to [101,258[
Possible chimera : FHTFGA201A6CG0 [5,248[ cut back to [5,127[
Possible chimera : FHTFGA201B09DB [5,235[ cut back to [5,150[
Possible chimera : FHTFGA201BXWEB [5,251[ cut back to [5,124[
Possible chimera : FHTFGA201DU36L [5,251[ cut back to [5,192[
Possible chimera : FHTFGA201CSZKN [5,255[ cut back to [5,164[
Possible chimera : FHTFGA201AKSBX [5,285[ cut back to [147,286[
Possible chimera : FHTFGA201BBCAM [5,249[ cut back to [5,193[
Possible chimera : FHTFGA201C25K3 [5,256[ cut back to [5,191[
Possible chimera : FHTFGA201CYW17 [29,249[ cut back to [29,194[
Possible chimera : FHTFGA201CA6P8 [5,270[ cut back to [5,198[
Possible chimera : FHTFGA201BRSDH [5,238[ cut back to [5,158[
Possible chimera : FHTFGA201BG5YS [5,271[ cut back to [5,191[
Possible chimera : FHTFGA201C9DWH [5,267[ cut back to [106,269[
Possible chimera : FHTFGA201EQKKD [5,265[ cut back to [5,198[
Possible chimera : FHTFGA201ALNPG [5,272[ cut back to [5,190[
Possible chimera : FHTFGA201AD9LG [5,248[ cut back to [5,179[
Possible chimera : FHTFGA201APEEX [5,251[ cut back to [5,169[
Possible chimera : FHTFGA201ARCRT [5,246[ cut back to [5,180[
Possible chimera : FHTFGA201AMXVD [5,268[ cut back to [5,210[
Possible chimera : FHTFGA201C5WDP [5,252[ cut back to [5,195[
Possible chimera : FHTFGA201B6LES [5,260[ cut back to [75,261[
Possible chimera : FHTFGA201B8HYQ [5,212[ cut back to [5,138[
Possible chimera : FHTFGA201CQRK2 [5,245[ cut back to [5,179[
Possible chimera : FHTFGA201EFWXY [5,211[ cut back to [5,93[
Possible chimera : FHTFGA201DN5ET [5,225[ cut back to [5,110[
Possible chimera : FHTFGA201C7W6W [5,247[ cut back to [77,247[
Possible chimera : FHTFGA201C5YFS [5,282[ cut back to [5,190[
Possible chimera : FHTFGA201D4BWH [5,254[ cut back to [5,203[
Possible chimera : FHTFGA201BFOXM [5,256[ cut back to [5,211[
Possible chimera : FHTFGA201BV9L8 [5,238[ cut back to [5,195[
Possible chimera : FHTFGA201DW0B7 [5,286[ cut back to [5,184[
Possible chimera : FHTFGA201A4X2O [5,231[ cut back to [5,173[
Possible chimera : FHTFGA201B1ETG [5,269[ cut back to [5,173[
Possible chimera : FHTFGA201DIHFY [5,249[ cut back to [125,249[
Possible chimera : FHTFGA201ALVD1 [5,188[ cut back to [81,188[
Possible chimera : FHTFGA201B158M [5,248[ cut back to [5,195[
Possible chimera : FHTFGA201BRN5K [5,270[ cut back to [5,192[
Possible chimera : FHTFGA201DOS5Y [5,256[ cut back to [5,176[
Possible chimera : FHTFGA201C1YAL [5,244[ cut back to [5,181[
Possible chimera : FHTFGA201CY009 [5,250[ cut back to [5,163[
Possible chimera : FHTFGA201CQTT7 [5,266[ cut back to [5,198[
Possible chimera : FHTFGA201E27I8 [5,256[ cut back to [5,193[
Possible chimera : FHTFGA201C7IDA [5,234[ cut back to [5,123[
Possible chimera : FHTFGA201AXYV1 [5,247[ cut back to [5,185[
Possible chimera : FHTFGA201CCUJT [5,247[ cut back to [5,143[
Possible chimera : FHTFGA201C41UX [5,232[ cut back to [5,167[
Possible chimera : FHTFGA201D411Q [5,253[ cut back to [5,163[
Possible chimera : FHTFGA201DA357 [5,236[ cut back to [5,148[
Possible chimera : FHTFGA201C40LP [5,255[ cut back to [5,187[
Possible chimera : FHTFGA201D1NCY [5,251[ cut back to [5,175[
Possible chimera : FHTFGA201CRRTN [5,233[ cut back to [5,177[
Possible chimera : FHTFGA201EP9VK [5,244[ cut back to [5,126[
Possible chimera : FHTFGA201BQWNJ [5,246[ cut back to [77,248[
Possible chimera : FHTFGA201B86LC [5,264[ cut back to [5,203[
Possible chimera : FHTFGA201BD1PU [5,250[ cut back to [5,176[
Possible chimera : FHTFGA201E0KIK [5,248[ cut back to [115,248[
Possible chimera : FHTFGA201D2K36 [5,234[ cut back to [5,135[
Possible chimera : FHTFGA201CK8E4 [5,261[ cut back to [5,161[
Possible chimera : FHTFGA201D5XP5 [5,265[ cut back to [5,207[
Possible chimera : FHTFGA201BLWIX [5,254[ cut back to [128,256[
Possible chimera : FHTFGA201DVOML [5,185[ cut back to [96,185[
Possible chimera : FHTFGA201D28V2 [5,249[ cut back to [119,249[
Possible chimera : FHTFGA201BQQRP [5,263[ cut back to [5,168[
Possible chimera : FHTFGA201EYOV1 [5,259[ cut back to [5,188[
Possible chimera : FHTFGA201CPJLJ [5,268[ cut back to [5,190[
Possible chimera : FHTFGA201DGI6W [5,267[ cut back to [5,204[
Possible chimera : FHTFGA201DWTTF [5,253[ cut back to [5,107[
Possible chimera : FHTFGA201B61KV [5,261[ cut back to [5,53[
Possible chimera : FHTFGA201EBB9P [5,250[ cut back to [5,163[
Possible chimera : FHTFGA201BPZZH [5,242[ cut back to [5,171[
Possible chimera : FHTFGA201A6O9F [5,245[ cut back to [5,172[
Possible chimera : FHTFGA201BRSP3 [5,229[ cut back to [51,249[
Possible chimera : FHTFGA201E3S1Z [5,256[ cut back to [5,183[
Possible chimera : FHTFGA201DMIFT [5,220[ cut back to [5,132[
Possible chimera : FHTFGA201DV0IM [5,276[ cut back to [5,231[
Possible chimera : FHTFGA201B4ZQD [5,244[ cut back to [5,193[
Possible chimera : FHTFGA201EV5UA [5,266[ cut back to [5,171[
Possible chimera : FHTFGA201BLALJ [5,235[ cut back to [5,167[
Possible chimera : FHTFGA201BC0R5 [5,269[ cut back to [5,224[
Possible chimera : FHTFGA201CF329 [5,252[ cut back to [127,254[
Possible chimera : FHTFGA201ETO1X [5,260[ cut back to [5,216[
Possible chimera : FHTFGA201AGVS3 [5,196[ cut back to [52,196[
Possible chimera : FHTFGA201B88GA [5,270[ cut back to [5,174[
Possible chimera : FHTFGA201EXZI6 [5,274[ cut back to [5,223[
Possible chimera : FHTFGA201BF1WI [5,266[ cut back to [5,142[
Possible chimera : FHTFGA201A7024 [5,245[ cut back to [5,183[
Possible chimera : FHTFGA201B36B7 [5,230[ cut back to [73,231[
Possible chimera : FHTFGA201D3T7I [5,268[ cut back to [5,196[
Possible chimera : FHTFGA201BUT3Y [5,252[ cut back to [5,149[
Possible chimera : FHTFGA201E10QC [5,254[ cut back to [5,171[
Possible chimera : FHTFGA201CS1R0 [5,252[ cut back to [5,171[
Possible chimera : FHTFGA201BV2OU [5,237[ cut back to [5,192[
Possible chimera : FHTFGA201D2YRP [5,256[ cut back to [105,257[
Possible chimera : FHTFGA201ANBK9 [5,248[ cut back to [5,173[
Possible chimera : FHTFGA201DX4LM [5,258[ cut back to [78,258[
Possible chimera : FHTFGA201AO7TX [5,247[ cut back to [5,201[
Possible chimera : FHTFGA201EJQVB [5,256[ cut back to [5,203[
Possible chimera : FHTFGA201CV5N4 [5,258[ cut back to [123,259[
Possible chimera : FHTFGA201B3FOC [5,251[ cut back to [5,201[
Possible chimera : FHTFGA201BWA6H [5,268[ cut back to [5,195[
Possible chimera : FHTFGA201DPTL1 [5,257[ cut back to [171,259[
Possible chimera : FHTFGA201DP5FK [5,289[ cut back to [5,206[
Possible chimera : FHTFGA201BQPTI [5,250[ cut back to [5,197[
Possible chimera : FHTFGA201B90GM [5,245[ cut back to [119,247[
Possible chimera : FHTFGA201CN5WR [5,263[ cut back to [5,150[
Possible chimera : FHTFGA201BHS1O [5,179[ cut back to [86,224[
Possible chimera : FHTFGA201CME18 [5,251[ cut back to [5,201[
Possible chimera : FHTFGA201DS5CW [5,251[ cut back to [5,196[
Possible chimera : FHTFGA201BN3MI [5,287[ cut back to [5,215[
Possible chimera : FHTFGA201DDLMS [5,237[ cut back to [5,164[
Possible chimera : FHTFGA201CS9UL [5,248[ cut back to [5,157[
Possible chimera : FHTFGA201DQKUW [5,254[ cut back to [5,200[
Possible chimera : FHTFGA201CZ47E [5,252[ cut back to [5,174[
Possible chimera : FHTFGA201A9SCP [5,249[ cut back to [5,194[
Possible chimera : FHTFGA201CUHII [5,226[ cut back to [5,182[
Possible chimera : FHTFGA201B0GYS [5,231[ cut back to [5,148[
Possible chimera : FHTFGA201D64YO [5,254[ cut back to [5,159[
Possible chimera : FHTFGA201EL19A [5,249[ cut back to [5,193[
Possible chimera : FHTFGA201CP85Y [5,223[ cut back to [5,153[
Possible chimera : FHTFGA201BDOVD [5,261[ cut back to [5,199[
Possible chimera : FHTFGA201B37E2 [5,291[ cut back to [5,237[
Possible chimera : FHTFGA201C8QBU [5,243[ cut back to [5,186[
Possible chimera : FHTFGA201B014O [5,241[ cut back to [5,138[
Possible chimera : FHTFGA201BHPWA [5,261[ cut back to [5,179[
Possible chimera : FHTFGA201AZ5EC [5,256[ cut back to [5,201[
Possible chimera : FHTFGA201BMTQ7 [5,260[ cut back to [5,177[
Possible chimera : FHTFGA201DE7M1 [5,243[ cut back to [5,170[
Possible chimera : FHTFGA201CPGUP [5,275[ cut back to [5,172[
Possible chimera : FHTFGA201B5L32 [5,243[ cut back to [5,113[
Possible chimera : FHTFGA201BT0V5 [5,220[ cut back to [5,162[
Possible chimera : FHTFGA201AVIQM [5,263[ cut back to [5,205[
Possible chimera : FHTFGA201ESBHS [5,250[ cut back to [55,250[
Possible chimera : FHTFGA201AN009 [5,245[ cut back to [5,184[
Possible chimera : FHTFGA201DAKBQ [5,250[ cut back to [5,197[
Possible chimera : FHTFGA201A2T6V [7,217[ cut back to [108,244[
Possible chimera : FHTFGA201ALTM3 [5,229[ cut back to [5,178[
Possible chimera : FHTFGA201CSN8Y [5,257[ cut back to [5,174[
Possible chimera : FHTFGA201EXJW9 [5,269[ cut back to [5,212[
Possible chimera : FHTFGA201COWSU [5,242[ cut back to [5,171[
Possible chimera : FHTFGA201CE30I [5,247[ cut back to [5,193[
Possible chimera : FHTFGA201BICN2 [5,252[ cut back to [5,155[
Possible chimera : FHTFGA201DJOYC [5,252[ cut back to [5,207[
Possible chimera : FHTFGA201ETC91 [5,241[ cut back to [5,127[
Possible chimera : FHTFGA201BHCMR [5,251[ cut back to [124,251[
Possible chimera : FHTFGA201A3BUA [5,259[ cut back to [5,202[
Possible chimera : FHTFGA201C99KD [5,193[ cut back to [81,238[
Possible chimera : FHTFGA201BURMS [5,236[ cut back to [5,191[
Possible chimera : FHTFGA201EZRZE [5,251[ cut back to [5,191[
Possible chimera : FHTFGA201AGN00 [5,189[ cut back to [5,138[
Possible chimera : FHTFGA201EWVTO [5,251[ cut back to [5,203[
Possible chimera : FHTFGA201CY701 [5,234[ cut back to [5,163[
Possible chimera : FHTFGA201BUDZB [5,225[ cut back to [5,156[
Possible chimera : FHTFGA201ASBOB [5,245[ cut back to [5,192[
Possible chimera : FHTFGA201BEJ3V [5,244[ cut back to [5,186[
Possible chimera : FHTFGA201AFR4L [5,248[ cut back to [88,253[
Possible chimera : FHTFGA201CUVWS [5,263[ cut back to [5,188[
Possible chimera : FHTFGA201DFJTP [5,235[ cut back to [5,149[
Possible chimera : FHTFGA201CH43N [5,252[ cut back to [65,254[
Possible chimera : FHTFGA201DZO9I [5,263[ cut back to [5,207[
Possible chimera : FHTFGA201B4X5D [5,233[ cut back to [5,173[
Possible chimera : FHTFGA201CKYYB [5,263[ cut back to [5,202[
Possible chimera : FHTFGA201BKEQ8 [5,270[ cut back to [5,222[
Possible chimera : FHTFGA201CGFL8 [5,247[ cut back to [5,183[
Possible chimera : FHTFGA201DLHQB [5,241[ cut back to [5,160[
Possible chimera : FHTFGA201A8IN1 [5,213[ cut back to [5,138[
Possible chimera : FHTFGA201BUKL0 [5,240[ cut back to [5,181[
Possible chimera : FHTFGA201B3JP3 [5,256[ cut back to [5,148[
Possible chimera : FHTFGA201EUS7G [5,267[ cut back to [5,181[
Possible chimera : FHTFGA201A2GYK [5,237[ cut back to [5,168[
Possible chimera : FHTFGA201BW4E6 [5,155[ cut back to [66,215[
Possible chimera : FHTFGA201BBPF4 [5,294[ cut back to [5,216[
Possible chimera : FHTFGA201EPRRC [5,243[ cut back to [5,184[
Possible chimera : FHTFGA201E3HKS [5,236[ cut back to [5,172[
Possible chimera : FHTFGA201AYBGA [5,247[ cut back to [5,190[
Possible chimera : FHTFGA201CLG4D [5,268[ cut back to [5,144[
Possible chimera : FHTFGA201ALG65 [5,207[ cut back to [104,207[
Possible chimera : FHTFGA201CX9P7 [5,260[ cut back to [5,203[
Possible chimera : FHTFGA201B9E73 [5,262[ cut back to [5,144[
Possible chimera : FHTFGA201C19CD [5,249[ cut back to [5,170[
Possible chimera : FHTFGA201BYUMX [5,260[ cut back to [5,181[
Possible chimera : FHTFGA201DRHBC [5,271[ cut back to [5,179[
Possible chimera : FHTFGA201AM0RX [5,261[ cut back to [5,195[
Possible chimera : FHTFGA201B43CD [5,257[ cut back to [5,180[
Possible chimera : FHTFGA201AXTKM [5,244[ cut back to [5,190[
Possible chimera : FHTFGA201A786A [5,266[ cut back to [5,205[
Possible chimera : FHTFGA201ELEGE [5,244[ cut back to [5,197[
Possible chimera : FHTFGA201EDP37 [5,242[ cut back to [5,175[
Possible chimera : FHTFGA201DOIAX [5,262[ cut back to [76,263[
Possible chimera : FHTFGA202HU6LO [5,239[ cut back to [46,240[
Possible chimera : FHTFGA202GL7SC [5,253[ cut back to [5,188[
Possible chimera : FHTFGA202IK0JG [5,260[ cut back to [116,267[
Possible chimera : FHTFGA202H046V [5,253[ cut back to [83,253[
Possible chimera : FHTFGA202GAF35 [5,254[ cut back to [5,144[
Possible chimera : FHTFGA202F6XJD [5,261[ cut back to [5,199[
Possible chimera : FHTFGA202GCPUA [5,242[ cut back to [5,170[
Possible chimera : FHTFGA202GQR6U [5,245[ cut back to [5,168[
Possible chimera : FHTFGA202GTIYA [5,128[ cut back to [5,75[
Possible chimera : FHTFGA202IQPSJ [5,260[ cut back to [5,207[
Possible chimera : FHTFGA202JT4ON [5,273[ cut back to [117,273[
Possible chimera : FHTFGA202GI8YE [5,236[ cut back to [5,148[
Possible chimera : FHTFGA202GLU9G [5,253[ cut back to [83,254[
Possible chimera : FHTFGA202F34MN [5,265[ cut back to [5,170[
Possible chimera : FHTFGA202GVVED [5,235[ cut back to [5,141[
Possible chimera : FHTFGA202FOX6S [5,254[ cut back to [64,254[
Possible chimera : FHTFGA202J2737 [5,242[ cut back to [5,147[
Possible chimera : FHTFGA202IIHZR [5,210[ cut back to [46,250[
Possible chimera : FHTFGA202H8WB7 [5,244[ cut back to [5,178[
Possible chimera : FHTFGA202HIHGP [5,237[ cut back to [144,242[
Possible chimera : FHTFGA202G8NB0 [5,237[ cut back to [5,184[
Possible chimera : FHTFGA202JC6Q4 [5,235[ cut back to [5,182[
Possible chimera : FHTFGA202JLMUG [5,258[ cut back to [5,183[
Possible chimera : FHTFGA202FFPZK [5,248[ cut back to [5,179[
Possible chimera : FHTFGA202F8QJW [5,258[ cut back to [5,154[
Possible chimera : FHTFGA202H8LLF [5,255[ cut back to [5,168[
Possible chimera : FHTFGA202G116M [5,259[ cut back to [5,178[
Possible chimera : FHTFGA202GW9DM [5,232[ cut back to [5,158[
Possible chimera : FHTFGA202IJ0DW [5,268[ cut back to [133,268[
Possible chimera : FHTFGA202G9T7J [5,227[ cut back to [5,166[
Possible chimera : FHTFGA202I80S4 [5,232[ cut back to [5,179[
Possible chimera : FHTFGA202GEUBY [5,272[ cut back to [5,224[
Possible chimera : FHTFGA202HYPIB [5,269[ cut back to [5,181[
Possible chimera : FHTFGA202FNPE1 [5,265[ cut back to [5,195[
Possible chimera : FHTFGA202JETAC [5,236[ cut back to [5,144[
Possible chimera : FHTFGA202GPWZ0 [5,246[ cut back to [144,248[
Possible chimera : FHTFGA202HGVS7 [5,247[ cut back to [5,141[
Possible chimera : FHTFGA202H2WAO [5,188[ cut back to [53,188[
Possible chimera : FHTFGA202G9DPH [5,262[ cut back to [5,191[
Possible chimera : FHTFGA202HO1X6 [5,266[ cut back to [5,168[
Possible chimera : FHTFGA202ILFM5 [5,259[ cut back to [5,154[
Possible chimera : FHTFGA202GOFUV [5,261[ cut back to [5,214[
Possible chimera : FHTFGA202HZRTK [5,263[ cut back to [5,152[
Possible chimera : FHTFGA202IV3ZF [5,259[ cut back to [5,211[
Possible chimera : FHTFGA202G3RVV [5,265[ cut back to [5,172[
Possible chimera : FHTFGA202JQO74 [5,279[ cut back to [5,178[
Possible chimera : FHTFGA202JIXRQ [5,259[ cut back to [5,167[
Possible chimera : FHTFGA202HVGFW [5,254[ cut back to [5,160[
Possible chimera : FHTFGA202JO6W9 [5,247[ cut back to [5,176[
Possible chimera : FHTFGA202HG1F1 [5,241[ cut back to [5,143[
Possible chimera : FHTFGA202GGYG9 [5,256[ cut back to [5,194[
Possible chimera : FHTFGA202JX3P7 [5,162[ cut back to [5,122[
Possible chimera : FHTFGA202IWNAI [5,266[ cut back to [5,174[
Possible chimera : FHTFGA202IHEKE [5,270[ cut back to [5,226[
Possible chimera : FHTFGA202HG7DY [5,225[ cut back to [5,172[
Possible chimera : FHTFGA202JTJK7 [5,246[ cut back to [5,185[
Possible chimera : FHTFGA202FNYPK [5,251[ cut back to [5,178[
Possible chimera : FHTFGA202GFAZV [5,237[ cut back to [5,174[
Possible chimera : FHTFGA202J59W6 [5,256[ cut back to [5,160[
Possible chimera : FHTFGA202IXUEO [5,227[ cut back to [5,113[
Possible chimera : FHTFGA202IPSRB [5,211[ cut back to [5,130[
Possible chimera : FHTFGA202G3UUS [5,243[ cut back to [137,244[
Possible chimera : FHTFGA202G89OO [5,183[ cut back to [5,132[
Possible chimera : FHTFGA202FD5AA [5,240[ cut back to [5,180[
Possible chimera : FHTFGA202FNVCB [5,268[ cut back to [5,211[
Possible chimera : FHTFGA202IV7Y4 [5,244[ cut back to [5,193[
Possible chimera : FHTFGA202HI026 [5,254[ cut back to [5,143[
Possible chimera : FHTFGA202GSLYD [5,227[ cut back to [86,227[
Possible chimera : FHTFGA202ITQQI [5,235[ cut back to [5,143[
Possible chimera : FHTFGA202HSZ5E [5,241[ cut back to [5,168[
Possible chimera : FHTFGA202H8LC6 [5,259[ cut back to [5,158[
Possible chimera : FHTFGA202GOVTA [5,258[ cut back to [5,207[
Possible chimera : FHTFGA202FMAF0 [5,263[ cut back to [5,209[
Possible chimera : FHTFGA202H8X17 [5,265[ cut back to [5,194[
Possible chimera : FHTFGA202G235J [5,244[ cut back to [5,182[
Possible chimera : FHTFGA202I8A06 [5,249[ cut back to [122,250[
Possible chimera : FHTFGA202JSO6P [5,251[ cut back to [5,179[
Possible chimera : FHTFGA202HWFGB [5,277[ cut back to [5,205[
Possible chimera : FHTFGA202JFZSE [5,250[ cut back to [72,275[
Possible chimera : FHTFGA202G9S5I [5,257[ cut back to [74,257[
Possible chimera : FHTFGA202HJEGZ [5,258[ cut back to [133,259[
Possible chimera : FHTFGA202HM28F [5,176[ cut back to [90,222[
Possible chimera : FHTFGA202IGI0P [5,245[ cut back to [5,158[
Possible chimera : FHTFGA202I32A5 [5,211[ cut back to [5,157[
Possible chimera : FHTFGA202F7APS [5,246[ cut back to [108,249[
Possible chimera : FHTFGA202IN0UU [5,261[ cut back to [5,196[
Possible chimera : FHTFGA202FQJ37 [5,252[ cut back to [5,176[
Possible chimera : FHTFGA202JW0YI [5,252[ cut back to [5,171[
Possible chimera : FHTFGA202HRQDO [5,280[ cut back to [5,229[
Possible chimera : FHTFGA202FYQO1 [5,245[ cut back to [5,191[
Possible chimera : FHTFGA202GJ2FO [5,272[ cut back to [5,216[
Possible chimera : FHTFGA202IPNC7 [5,246[ cut back to [5,146[
Possible chimera : FHTFGA202G8ZW5 [5,272[ cut back to [5,225[
Possible chimera : FHTFGA202ITWO9 [5,246[ cut back to [5,174[
Possible chimera : FHTFGA202F9ZZD [5,242[ cut back to [90,242[
Possible chimera : FHTFGA202GMTOJ [5,243[ cut back to [5,199[
Possible chimera : FHTFGA202IA593 [5,245[ cut back to [119,248[
Possible chimera : FHTFGA202IP8L1 [5,217[ cut back to [104,237[
Possible chimera : FHTFGA202IMXU5 [5,238[ cut back to [127,238[
Possible chimera : FHTFGA202GB1EW [5,253[ cut back to [125,255[
Possible chimera : FHTFGA202IQTAM [5,257[ cut back to [5,170[
Possible chimera : FHTFGA202GCZGR [5,263[ cut back to [5,139[
Possible chimera : FHTFGA202IDS9U [5,270[ cut back to [5,213[
Possible chimera : FHTFGA202J3LYF [5,240[ cut back to [49,240[
Possible chimera : FHTFGA202JI4S0 [5,272[ cut back to [5,216[
Possible chimera : FHTFGA202I2165 [5,249[ cut back to [5,195[
Possible chimera : FHTFGA202HMN02 [5,260[ cut back to [5,177[
Possible chimera : FHTFGA202H0AJZ [5,229[ cut back to [121,229[
Possible chimera : FHTFGA202I1ELJ [5,250[ cut back to [5,131[
Possible chimera : FHTFGA202IO8T1 [5,203[ cut back to [107,249[
Possible chimera : FHTFGA202H52UA [5,260[ cut back to [5,184[
Possible chimera : FHTFGA202JDO43 [5,230[ cut back to [111,230[
Possible chimera : FHTFGA202H94WV [5,280[ cut back to [120,281[
Possible chimera : FHTFGA202J6RGB [5,225[ cut back to [5,172[
Possible chimera : FHTFGA202HXZKH [5,248[ cut back to [119,248[
Possible chimera : FHTFGA202JWNL5 [5,252[ cut back to [5,200[
Possible chimera : FHTFGA202FJVPT [5,233[ cut back to [112,249[
Possible chimera : FHTFGA202H17LC [5,265[ cut back to [5,179[
Possible chimera : FHTFGA202IM5KP [5,275[ cut back to [5,212[
Possible chimera : FHTFGA202IM1HL [5,198[ cut back to [85,198[
Possible chimera : FHTFGA202IA9LL [5,246[ cut back to [5,178[
Possible chimera : FHTFGA202FYB7L [5,252[ cut back to [5,144[
Possible chimera : FHTFGA202HQ6RS [5,270[ cut back to [5,151[
Possible chimera : FHTFGA202GMICX [5,252[ cut back to [74,252[
Possible chimera : FHTFGA202HLMFU [5,259[ cut back to [5,177[
Possible chimera : FHTFGA202IRRFS [5,239[ cut back to [5,191[
Possible chimera : FHTFGA202GD8SE [5,261[ cut back to [5,171[
Possible chimera : FHTFGA202IOQFA [5,240[ cut back to [5,187[
Possible chimera : FHTFGA202GZ0N1 [5,250[ cut back to [5,204[
Possible chimera : FHTFGA202G1HLL [5,256[ cut back to [5,207[
Possible chimera : FHTFGA202ICSD7 [5,242[ cut back to [5,169[
Possible chimera : FHTFGA202GWO5E [23,258[ cut back to [23,143[
Possible chimera : FHTFGA202G2AB4 [5,206[ cut back to [5,104[
Possible chimera : FHTFGA202JIIEH [5,264[ cut back to [5,194[
Possible chimera : FHTFGA202FOM1A [5,254[ cut back to [72,256[
Possible chimera : FHTFGA202G9SMF [5,256[ cut back to [119,260[
Possible chimera : FHTFGA202G3IGU [5,252[ cut back to [5,204[
Possible chimera : FHTFGA202JYX1A [5,224[ cut back to [115,224[
Possible chimera : FHTFGA202F9NH8 [5,284[ cut back to [5,194[
Possible chimera : FHTFGA202GJH5G [5,261[ cut back to [5,185[
Possible chimera : FHTFGA202H9XUO [5,263[ cut back to [5,147[
Possible chimera : FHTFGA202G9OJF [5,246[ cut back to [5,136[
Possible chimera : FHTFGA202GEOS7 [5,261[ cut back to [5,195[
Possible chimera : FHTFGA202FHQZ5 [14,236[ cut back to [14,177[
Possible chimera : FHTFGA202F55FH [5,209[ cut back to [5,158[
Possible chimera : FHTFGA202HTMWZ [5,257[ cut back to [5,187[
Possible chimera : FHTFGA202JNI8G [5,262[ cut back to [139,264[
Possible chimera : FHTFGA202IVSVI [5,255[ cut back to [5,197[
Possible chimera : FHTFGA202IW5HK [5,251[ cut back to [5,140[
Possible chimera : FHTFGA202F805U [5,254[ cut back to [5,211[
Possible chimera : FHTFGA202F2JI1 [5,246[ cut back to [5,192[
Possible chimera : FHTFGA202GL2QA [5,263[ cut back to [5,215[
Possible chimera : FHTFGA202F3AYL [5,267[ cut back to [5,224[
Possible chimera : FHTFGA202HJLMI [5,250[ cut back to [5,197[
Possible chimera : FHTFGA202JR37V [5,260[ cut back to [5,134[
Possible chimera : FHTFGA202JLVTM [5,255[ cut back to [5,204[
Possible chimera : FHTFGA202GLJP7 [5,262[ cut back to [5,178[
Possible chimera : FHTFGA202IDIE1 [5,271[ cut back to [66,273[
Possible chimera : FHTFGA202IL2CY [5,267[ cut back to [5,211[
Possible chimera : FHTFGA202GUQFB [5,282[ cut back to [131,282[
Possible chimera : FHTFGA202H6EYG [5,254[ cut back to [5,149[
Possible chimera : FHTFGA202J5BUA [5,251[ cut back to [5,155[
Possible chimera : FHTFGA202FQ01R [5,255[ cut back to [5,198[
Possible chimera : FHTFGA202HQFQI [5,244[ cut back to [72,245[
Possible chimera : FHTFGA202J2XUN [5,242[ cut back to [109,242[
Possible chimera : FHTFGA202H0145 [5,240[ cut back to [5,133[
Possible chimera : FHTFGA202G06D4 [5,237[ cut back to [80,238[
Possible chimera : FHTFGA202IY4RD [5,271[ cut back to [5,207[
Possible chimera : FHTFGA202G8MIT [5,265[ cut back to [5,184[
Possible chimera : FHTFGA202HMA8W [5,194[ cut back to [95,194[
Possible chimera : FHTFGA202HFZH3 [5,166[ cut back to [5,63[
Possible chimera : FHTFGA202IJNV4 [5,266[ cut back to [5,210[
Possible chimera : FHTFGA202HG03Y [5,243[ cut back to [61,243[
Possible chimera : FHTFGA202F8C71 [5,264[ cut back to [5,206[
Possible chimera : FHTFGA202HKYCC [5,241[ cut back to [5,127[
Possible chimera : FHTFGA202IRKZC [5,241[ cut back to [102,243[
Possible chimera : FHTFGA202F9UVA [5,262[ cut back to [5,216[
Possible chimera : FHTFGA202FMZ9U [5,206[ cut back to [5,119[
Possible chimera : FHTFGA202FTWWU [5,242[ cut back to [5,192[
Possible chimera : FHTFGA202IRUOD [5,272[ cut back to [5,227[
Possible chimera : FHTFGA202JJEWK [5,246[ cut back to [81,247[
Possible chimera : FHTFGA202JSMQC [5,257[ cut back to [5,212[
Possible chimera : FHTFGA202JQP4M [5,269[ cut back to [5,223[
Possible chimera : FHTFGA202H0HHR [5,243[ cut back to [5,179[
Possible chimera : FHTFGA202HKTKF [5,237[ cut back to [5,118[
Possible chimera : FHTFGA202HZ3G8 [5,243[ cut back to [5,171[
Possible chimera : FHTFGA202GW8FF [5,260[ cut back to [5,202[
Possible chimera : FHTFGA202G6U5G [5,259[ cut back to [5,194[
Possible chimera : FHTFGA202HTTDJ [5,257[ cut back to [5,164[
Possible chimera : FHTFGA202H2HQ9 [5,264[ cut back to [5,156[
Possible chimera : FHTFGA202FZBKE [5,249[ cut back to [5,201[
Possible chimera : FHTFGA202JUSJ6 [5,113[ cut back to [53,159[
Possible chimera : FHTFGA202G3EHG [5,270[ cut back to [101,270[
Possible chimera : FHTFGA202GCHJ7 [5,269[ cut back to [5,207[
Possible chimera : FHTFGA202GB93J [5,247[ cut back to [5,146[
Possible chimera : FHTFGA202HRHOP [5,238[ cut back to [5,141[
Possible chimera : FHTFGA202IZK12 [5,267[ cut back to [5,212[
Possible chimera : FHTFGA202GPYXG [5,260[ cut back to [5,149[
Possible chimera : FHTFGA202G2TG7 [5,247[ cut back to [5,196[
Possible chimera : FHTFGA202IITU8 [5,258[ cut back to [5,196[
Possible chimera : FHTFGA202F72L5 [5,262[ cut back to [5,173[
Possible chimera : FHTFGA202HTLN7 [5,216[ cut back to [56,237[
Possible chimera : FHTFGA202IQRVE [5,249[ cut back to [5,189[
Possible chimera : FHTFGA202IJELD [5,254[ cut back to [114,257[
Possible chimera : FHTFGA202H61UA [5,259[ cut back to [5,146[
Possible chimera : FHTFGA202FUZ3O [5,247[ cut back to [5,133[
Possible chimera : FHTFGA202GCTUX [5,249[ cut back to [5,149[
Possible chimera : FHTFGA202HSSUV [5,289[ cut back to [5,163[
Possible chimera : FHTFGA202H78GB [5,223[ cut back to [93,223[
Possible chimera : FHTFGA202GOOVH [5,280[ cut back to [5,236[
Possible chimera : FHTFGA202IO5GQ [5,263[ cut back to [5,164[
Possible chimera : FHTFGA202HXC8X [5,262[ cut back to [5,143[
Possible chimera : FHTFGA202GXXZF [5,261[ cut back to [5,137[
Possible chimera : FHTFGA202HKJHZ [5,251[ cut back to [5,154[
Possible chimera : FHTFGA202GQGNL [5,262[ cut back to [5,154[
Possible chimera : FHTFGA202HUJ6B [5,255[ cut back to [5,183[
Possible chimera : FHTFGA202H5UME [5,241[ cut back to [5,138[
Possible chimera : FHTFGA202JXN79 [5,252[ cut back to [5,166[
Possible chimera : FHTFGA202G9BXB [5,242[ cut back to [5,189[
Possible chimera : FHTFGA202GR3ZY [5,270[ cut back to [5,188[
Possible chimera : FHTFGA202FUY98 [5,251[ cut back to [5,197[
Possible chimera : FHTFGA202JNHOV [35,254[ cut back to [35,182[
Possible chimera : FHTFGA202HRDQO [5,245[ cut back to [5,189[
Possible chimera : FHTFGA202IOJ6A [5,258[ cut back to [5,179[
Possible chimera : FHTFGA202IF2CB [5,260[ cut back to [5,168[
Possible chimera : FHTFGA202H9TBQ [5,230[ cut back to [54,230[
Possible chimera : FHTFGA202GIIMY [5,255[ cut back to [5,179[
Possible chimera : FHTFGA202G6P20 [5,272[ cut back to [120,272[
Possible chimera : FHTFGA202HKG2J [5,268[ cut back to [5,190[
Possible chimera : FHTFGA202GE7I0 [5,247[ cut back to [5,169[
Possible chimera : FHTFGA202JB1P4 [5,281[ cut back to [5,151[
Possible chimera : FHTFGA202IL3VS [5,242[ cut back to [5,194[
Possible chimera : FHTFGA202F780T [5,223[ cut back to [5,162[
Possible chimera : FHTFGA202HU4C7 [5,246[ cut back to [5,188[
Possible chimera : FHTFGA202FVCFG [5,261[ cut back to [107,261[
Possible chimera : FHTFGA202HSGST [5,236[ cut back to [5,174[
Possible chimera : FHTFGA202GSY55 [5,265[ cut back to [5,223[
Possible chimera : FHTFGA202F8S98 [5,232[ cut back to [5,156[
Possible chimera : FHTFGA202H24U9 [5,240[ cut back to [5,151[
Possible chimera : FHTFGA202I01FM [5,218[ cut back to [5,132[
Possible chimera : FHTFGA202F32PV [5,253[ cut back to [5,167[
Possible chimera : FHTFGA202IJR7Z [5,250[ cut back to [5,108[
Possible chimera : FHTFGA202JDO65 [5,179[ cut back to [5,92[
Possible chimera : FHTFGA202JBWIH [5,247[ cut back to [5,151[
Possible chimera : FHTFGA202H0U9I [5,250[ cut back to [5,166[
Possible chimera : FHTFGA202IVKLG [5,255[ cut back to [5,190[
Possible chimera : FHTFGA202GYKX6 [5,254[ cut back to [5,211[
Possible chimera : FHTFGA202JDZR7 [5,275[ cut back to [5,203[
Possible chimera : FHTFGA202GEQL1 [5,272[ cut back to [5,174[
Possible chimera : FHTFGA202GX73E [5,249[ cut back to [5,173[
Possible chimera : FHTFGA202FGL9R [5,264[ cut back to [5,139[
Possible chimera : FHTFGA202I5PPP [5,215[ cut back to [5,153[
Possible chimera : FHTFGA202I8UK8 [5,274[ cut back to [5,210[
Possible chimera : FHTFGA202FRVD6 [5,261[ cut back to [5,160[
Possible chimera : FHTFGA202GBURG [5,247[ cut back to [5,169[
Possible chimera : FHTFGA202GHFT2 [5,258[ cut back to [5,204[
Possible chimera : FHTFGA202HUTRB [5,270[ cut back to [5,199[
Possible chimera : FHTFGA202FJL6G [5,233[ cut back to [5,181[
Possible chimera : FHTFGA202H9R4C [5,251[ cut back to [5,178[
Possible chimera : FHTFGA202JEWX0 [5,253[ cut back to [5,209[
Possible chimera : FHTFGA202FHFC3 [5,260[ cut back to [83,263[
Possible chimera : FHTFGA202JDI6T [5,257[ cut back to [5,191[
Possible chimera : FHTFGA202HBQS8 [8,279[ cut back to [8,210[
Possible chimera : FHTFGA202F4U5M [5,260[ cut back to [5,195[
Possible chimera : FHTFGA202GNBG1 [5,252[ cut back to [5,181[
Possible chimera : FHTFGA202IHH7C [5,256[ cut back to [5,205[
Possible chimera : FHTFGA202FQUTG [5,255[ cut back to [132,255[
Possible chimera : FHTFGA202G2J5T [5,223[ cut back to [105,235[
Possible chimera : FHTFGA202FRN62 [5,273[ cut back to [5,189[
Possible chimera : FHTFGA202ITI5I [5,277[ cut back to [5,212[
Possible chimera : FHTFGA202IKBDN [5,248[ cut back to [5,199[
Possible chimera : FHTFGA202IP97F [5,246[ cut back to [5,196[
Possible chimera : FHTFGA202GX7A5 [5,229[ cut back to [5,114[
Possible chimera : FHTFGA202JY9SF [5,223[ cut back to [5,174[
Possible chimera : FHTFGA202H1TWX [5,283[ cut back to [5,200[
Possible chimera : FHTFGA202F7762 [5,230[ cut back to [5,176[
Possible chimera : FHTFGA202H93KO [5,255[ cut back to [5,204[
Possible chimera : FHTFGA202I9B7N [5,249[ cut back to [5,203[
Possible chimera : FHTFGA202JT1W3 [5,250[ cut back to [5,142[
Possible chimera : FHTFGA202G9NQG [5,260[ cut back to [5,205[
Possible chimera : FHTFGA202GVJ06 [5,243[ cut back to [117,243[
Possible chimera : FHTFGA202JY9YV [5,257[ cut back to [5,173[
Possible chimera : FHTFGA202HJ8RO [5,275[ cut back to [5,215[
Possible chimera : FHTFGA202ICDGM [27,270[ cut back to [27,222[
Possible chimera : FHTFGA202ILI80 [5,232[ cut back to [5,186[
Possible chimera : FHTFGA202F0B4K [5,270[ cut back to [5,142[
Possible chimera : FHTFGA202JME4V [5,238[ cut back to [5,118[
Possible chimera : FHTFGA202J6NLB [5,258[ cut back to [70,259[
Possible chimera : FHTFGA202F7LL7 [5,258[ cut back to [5,182[
Possible chimera : FHTFGA202H5LAC [5,266[ cut back to [5,212[
Possible chimera : FHTFGA202H3KE7 [5,241[ cut back to [5,178[
Possible chimera : FHTFGA202H2OYN [5,265[ cut back to [5,195[
Possible chimera : FHTFGA202HIEG3 [5,264[ cut back to [97,264[
Possible chimera : FHTFGA202F0X5H [5,258[ cut back to [5,191[
Possible chimera : FHTFGA202ITB8U [5,241[ cut back to [5,198[
Possible chimera : FHTFGA202FZCK1 [5,257[ cut back to [5,92[
Possible chimera : FHTFGA202IDDHW [5,250[ cut back to [5,203[
Possible chimera : FHTFGA202IK5MV [5,233[ cut back to [5,163[
Possible chimera : FHTFGA202G86HT [5,195[ cut back to [5,95[
Possible chimera : FHTFGA202HC7BF [5,274[ cut back to [5,141[
Possible chimera : FHTFGA202HL3N9 [5,254[ cut back to [5,206[
Possible chimera : FHTFGA202IQLC9 [5,253[ cut back to [98,253[
Possible chimera : FHTFGA202GSFGU [5,265[ cut back to [5,205[
Possible chimera : FHTFGA202IOAF5 [5,231[ cut back to [5,116[
Possible chimera : FHTFGA202IHJEZ [5,269[ cut back to [5,213[
Possible chimera : FHTFGA202IBGE8 [5,248[ cut back to [5,147[
Possible chimera : FHTFGA202H6TUO [5,210[ cut back to [83,210[
Possible chimera : FHTFGA202IHYV3 [5,198[ cut back to [93,198[
Possible chimera : FHTFGA202F214E [5,243[ cut back to [119,243[
Possible chimera : FHTFGA202HBFMM [5,154[ cut back to [5,63[
Possible chimera : FHTFGA202HA7MG [5,270[ cut back to [125,271[
dmi fpo 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76817988 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4709524 kB
Inactive: 792312 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76817988 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2340048 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3363100 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 88%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1829128 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3628 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 9 304 B 0 B 0 B
Total: 1689621264 (1.6 GiB)
================================================================================
rsh increased memtouse to: 81386065920
Can load up to -903881216 skim edges at once.
We have 17771053 skims in file.
dmi rsh2 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76799636 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4728452 kB
Inactive: 792316 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76799636 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2359088 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3381496 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 84%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1848064 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3664 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1689676064 (1.6 GiB)
================================================================================
dmi rsh2 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76797404 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4730580 kB
Inactive: 792316 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76797404 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2361264 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384128 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 81%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1850236 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3668 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1707447136 (1.6 GiB)
================================================================================
dmi rsh2 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76797404 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4730692 kB
Inactive: 792324 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76797404 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2361264 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384128 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 77%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1850308 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3668 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1708053024 (1.6 GiB)
================================================================================
dmi rsh2 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76794924 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4733044 kB
Inactive: 792328 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76794924 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2363440 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386568 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 73%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1852680 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3672 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1710476480 (1.6 GiB)
================================================================================
dmi rsh2 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76792568 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4735396 kB
Inactive: 792332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76792568 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841244 kB
Writeback: 0 kB
AnonPages: 2366160 kB
Mapped: 47908 kB
Slab: 152008 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3388936 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 68%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1855040 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3676 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1712899936 (1.6 GiB)
================================================================================
dmi rsh2 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76790456 kB
Buffers: 167636 kB
Cached: 2994192 kB
SwapCached: 0 kB
Active: 4737748 kB
Inactive: 792336 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76790456 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841248 kB
Writeback: 0 kB
AnonPages: 2368336 kB
Mapped: 47908 kB
Slab: 151920 kB
PageTables: 16640 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3391304 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 65%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1857408 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3680 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1715323392 (1.6 GiB)
================================================================================
dmi rsh2 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76789844 kB
Buffers: 167636 kB
Cached: 2994264 kB
SwapCached: 0 kB
Active: 4738364 kB
Inactive: 792340 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76789844 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841320 kB
Writeback: 0 kB
AnonPages: 2368924 kB
Mapped: 47924 kB
Slab: 151868 kB
PageTables: 16720 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3391304 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 61%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858000 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1715929256 (1.6 GiB)
================================================================================
dmi rsh2 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76789224 kB
Buffers: 167636 kB
Cached: 2994264 kB
SwapCached: 0 kB
Active: 4738980 kB
Inactive: 792344 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76789224 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 841320 kB
Writeback: 0 kB
AnonPages: 2369468 kB
Mapped: 47924 kB
Slab: 151868 kB
PageTables: 16720 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3391304 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 55%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858592 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 10 336 B 0 B 0 B
Total: 1716535120 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:05:21 2009
De-normalising SKIM hits ... (this will take a while)
Loading skims in id range 0 to 1
Loaded 51 elements.
Sorting ... done.
Loading skims in id range 1 to 2
Loaded 11 elements.
Sorting ... done.
Loading skims in id range 2 to 3
Loaded 554 elements.
Sorting ... done.
Loading skims in id range 3 to 4
Loaded 16 elements.
Sorting ... done.
Loading skims in id range 4 to 5
Loaded 67 elements.
Sorting ... done.
Loading skims in id range 5 to 6
Loaded 120 elements.
Sorting ... done.
Loading skims in id range 6 to 7
Loaded 13 elements.
Sorting ... done.
Loading skims in id range 7 to 8
Loaded 56 elements.
Sorting ... done.
Loading skims in id range 8 to 9
Loaded 8 elements.
Sorting ... done.
Loading skims in id range 9 to 10
Loaded 14 elements.
Sorting ... done.
Loading skims in id range 10 to 11
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 11 to 12
Loaded 22 elements.
Sorting ... done.
Loading skims in id range 12 to 13
Loaded 12 elements.
Sorting ... done.
Loading skims in id range 13 to 14
Loaded 24 elements.
Sorting ... done.
Loading skims in id range 14 to 15
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 15 to 16
Loaded 47 elements.
Sorting ... done.
Loading skims in id range 16 to 17
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 17 to 18
Loaded 7 elements.
Sorting ... done.
Loading skims in id range 18 to 19
Loaded 27 elements.
Sorting ... done.
Loading skims in id range 19 to 20
Loaded 11 elements.
Sorting ... done.
Loading skims in id range 20 to 21
Loaded 13 elements.
Sorting ... done.
Loading skims in id range 21 to 22
Loaded 31 elements.
Sorting ... done.
Loading skims in id range 22 to 23
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 23 to 24
Loaded 43 elements.
Sorting ... done.
Loading skims in id range 24 to 25
Loaded 117 elements.
Sorting ... done.
Loading skims in id range 25 to 26
Loaded 48 elements.
Sorting ... done.
Loading skims in id range 26 to 27
Loaded 0 elements.
Sorting ... done.
Localtime: Thu Oct 1 18:14:35 2009
dmi rsh2 80
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76787940 kB
Buffers: 168976 kB
Cached: 2994328 kB
SwapCached: 0 kB
Active: 5039460 kB
Inactive: 493300 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76787940 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513796 kB
Writeback: 0 kB
AnonPages: 2369596 kB
Mapped: 47964 kB
Slab: 151268 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3392972 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858648 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 54 KiB 53 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 0 592 KiB 592 KiB 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1716535152 (1.6 GiB)
================================================================================
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
dmi rsh2 90
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76787932 kB
Buffers: 168976 kB
Cached: 2994328 kB
SwapCached: 0 kB
Active: 5039472 kB
Inactive: 493300 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76787932 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513796 kB
Writeback: 0 kB
AnonPages: 2369596 kB
Mapped: 47964 kB
Slab: 151268 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3392972 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858652 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1716535152 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:36 2009
Step 0
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Localtime: Thu Oct 1 18:14:36 2009
Only long reads
Step 10
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Step 20
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Step 30
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Step 40
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Step 50
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Step 60
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 120 elements at offset 16776
Loaded 120 elements
Loading block 6
Loading 13 elements at offset 19656
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19968
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21312
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21504
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21840
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22056
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22584
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22872
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23448
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23664
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24792
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25008
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25176
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25824
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26088
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26400
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27144
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27360
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28392
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31200
Loaded 48 elements
Total skims taken: 445
dmi rsh2 b0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76787808 kB
Buffers: 168976 kB
Cached: 2994328 kB
SwapCached: 0 kB
Active: 5039560 kB
Inactive: 493300 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76787808 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513796 kB
Writeback: 0 kB
AnonPages: 2369596 kB
Mapped: 47964 kB
Slab: 151268 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3392972 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858744 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1716535152 (1.6 GiB)
================================================================================
Filtering forward skims.
Localtime: Thu Oct 1 18:14:36 2009
Writing reduced skim file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Done.
Done.
Filtering complement skims.
Localtime: Thu Oct 1 18:14:39 2009
Writing reduced skim file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Done.
Done.
dmi rsh2 c0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788376 kB
Buffers: 168992 kB
Cached: 2994360 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493328 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788376 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513856 kB
Writeback: 0 kB
AnonPages: 2369664 kB
Mapped: 47996 kB
Slab: 151320 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1716535152 (1.6 GiB)
================================================================================
dmi rsh2 d0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788400 kB
Buffers: 168992 kB
Cached: 2994360 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788400 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513864 kB
Writeback: 0 kB
AnonPages: 2369664 kB
Mapped: 47996 kB
Slab: 151320 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1715929288 (1.6 GiB)
================================================================================
dmi rsh2 e0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788636 kB
Buffers: 168992 kB
Cached: 2994368 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493336 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788636 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513932 kB
Writeback: 0 kB
AnonPages: 2369664 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1715323424 (1.6 GiB)
================================================================================
dmi rsh2 f0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788264 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493340 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788264 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1712899968 (1.6 GiB)
================================================================================
dmi rsh2 g0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788264 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493344 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788264 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1710476512 (1.6 GiB)
================================================================================
dmi rsh2 h0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788264 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493348 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788264 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1708053056 (1.6 GiB)
================================================================================
dmi rsh2 i0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788264 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493352 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788264 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 17771053 17 MiB 19 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1707447168 (1.6 GiB)
================================================================================
dmi rsh2 j0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788140 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039564 kB
Inactive: 493356 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151332 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 54 KiB 52 KiB 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1689676096 (1.6 GiB)
================================================================================
dmi rsh2 k0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788148 kB
Buffers: 169000 kB
Cached: 2994376 kB
SwapCached: 0 kB
Active: 5039596 kB
Inactive: 493332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788148 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513948 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151324 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1689621328 (1.6 GiB)
================================================================================
dmi fpo 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788148 kB
Buffers: 169000 kB
Cached: 2994384 kB
SwapCached: 0 kB
Active: 5039596 kB
Inactive: 493336 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788148 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513952 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151324 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1689621328 (1.6 GiB)
================================================================================
dmi pre 61
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788148 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039596 kB
Inactive: 493340 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788148 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513984 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151328 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858748 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1689621328 (1.6 GiB)
================================================================================
Pass: 1
dmi 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788140 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039596 kB
Inactive: 493348 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513984 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151328 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858752 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 2 MiB 2 MiB 0 B
AS_probablermbsnotok: 0 2 MiB 2 MiB 0 B
AS_weakrmbsnotok: 0 2 MiB 2 MiB 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 11 368 B 0 B 0 B
Total: 1689621328 (1.6 GiB)
================================================================================
Making alignments.
dmi ma 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788140 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039596 kB
Inactive: 493348 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513984 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151328 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858764 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1689621456 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:46 2009
Aligning possible forward matches:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Alignment stats:
Potential: 245
Calculated: 64
Evaded (PB): 0
Rejected (checkfun): 0
Trans 100 saved: 181
Banned overlap pairs: 0 in 0 reads.
dmi ma 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788016 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039696 kB
Inactive: 493332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788016 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513984 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151328 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858948 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1689621456 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:46 2009
Aligning possible complement matches:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Alignment stats:
Potential: 200
Calculated: 39
Evaded (PB): 0
Rejected (checkfun): 0
Trans 100 saved: 161
Banned overlap pairs: 0 in 0 reads.
dmi ma 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788016 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039720 kB
Inactive: 493328 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788016 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513984 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151336 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858948 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1689621456 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:47 2009
dmi ma 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788252 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039720 kB
Inactive: 493332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513892 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151340 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858948 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1689621456 (1.6 GiB)
================================================================================
dmi ma 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788252 kB
Buffers: 169000 kB
Cached: 2994416 kB
SwapCached: 0 kB
Active: 5039720 kB
Inactive: 493336 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513892 kB
Writeback: 0 kB
AnonPages: 2369656 kB
Mapped: 47996 kB
Slab: 151340 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858948 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682351088 (1.6 GiB)
================================================================================
dmi 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788252 kB
Buffers: 169000 kB
Cached: 2994484 kB
SwapCached: 0 kB
Active: 5039720 kB
Inactive: 493344 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513964 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151344 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858948 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682351088 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:48 2009
Counting number of alignments in file ... done.
Expecting 445 alignments.
Localtime: Thu Oct 1 18:14:48 2009
Loading confirmed overlaps from disk (will need approximately 26. KiB RAM):
OMG OMG OMG ... we must reserve anew!
dmi laff omg 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788252 kB
Buffers: 169000 kB
Cached: 2994484 kB
SwapCached: 0 kB
Active: 5039760 kB
Inactive: 493312 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513964 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151344 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858952 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 24 B 0 B 0 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682351088 (1.6 GiB)
================================================================================
dmi laff omg 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788252 kB
Buffers: 169000 kB
Cached: 2994484 kB
SwapCached: 0 kB
Active: 5039760 kB
Inactive: 493316 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513964 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151344 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858952 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 24 B 0 B 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682361192 (1.6 GiB)
================================================================================
dmi laff omg 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788004 kB
Buffers: 169008 kB
Cached: 2994476 kB
SwapCached: 0 kB
Active: 5039760 kB
Inactive: 493320 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788004 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513964 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151344 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858952 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682381392 (1.6 GiB)
================================================================================
dmi laff 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788004 kB
Buffers: 169008 kB
Cached: 2994476 kB
SwapCached: 0 kB
Active: 5039760 kB
Inactive: 493324 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788004 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513964 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151344 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858952 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682381392 (1.6 GiB)
================================================================================
dmi laff 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76788124 kB
Buffers: 169008 kB
Cached: 2994484 kB
SwapCached: 0 kB
Active: 5039760 kB
Inactive: 493328 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76788124 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 513988 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48088 kB
Slab: 151248 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858956 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 15 496 B 0 B 0 B
Total: 1682381392 (1.6 GiB)
================================================================================
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Localtime: Thu Oct 1 18:14:49 2009
Sorting confirmed overlaps (this may take a while) ... done.
Localtime: Thu Oct 1 18:14:49 2009
Generating clusters:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
dmi 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76777088 kB
Buffers: 169024 kB
Cached: 3004936 kB
SwapCached: 0 kB
Active: 5045104 kB
Inactive: 498644 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76777088 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 524452 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48096 kB
Slab: 151320 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858956 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 16 528 B 0 B 0 B
Total: 1682381424 (1.6 GiB)
================================================================================
dmi 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76777088 kB
Buffers: 169024 kB
Cached: 3004936 kB
SwapCached: 0 kB
Active: 5045104 kB
Inactive: 498644 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76777088 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 524452 kB
Writeback: 0 kB
AnonPages: 2369764 kB
Mapped: 48096 kB
Slab: 151320 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1858960 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639939328 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 605864 592 KiB 0 B 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 0 592 KiB 592 KiB 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 16 528 B 0 B 0 B
Total: 1682381424 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:14:50 2009
Building new contig 1
Localtime: Thu Oct 1 18:14:50 2009
Unused reads: 471
+[1] +++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:50 2009
-------------- Contig statistics ----------------
Contig id: 1
Contig length: 417
Sanger 454 Solexa SOLiD
Num. reads 0 16 0 0
100% merged reads - - 0 0
Avg. read len 0 262 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 10.077 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 10.077
Consensus contains: A: 78 C: 104 G: 119 T: 115 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 53.606%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:50 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 14 cases.
Marked 14 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 1 cases.
Edited 1 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 2
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 455
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 2
Contig length: 424
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 248 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.943 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.943
Consensus contains: A: 91 C: 139 G: 124 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 62.175%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 16 cases.
Marked 16 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 1 cases.
Edited 1 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 3
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 438
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 3
Contig length: 395
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 10.484 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 10.484
Consensus contains: A: 87 C: 115 G: 114 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 57.975%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 4
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 421
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 4
Contig length: 495
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 254 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.749 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.749
Consensus contains: A: 81 C: 155 G: 159 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 3
GC content: 63.821%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 17 cases.
Marked 17 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 1 cases.
Edited 1 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 5
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 404
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 5
Contig length: 430
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 232 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.193 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.193
Consensus contains: A: 71 C: 140 G: 140 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.116%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 6
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 387
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 6
Contig length: 450
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.958 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.958
Consensus contains: A: 75 C: 146 G: 159 T: 67 N: 0
IUPAC: 0 Funny: 0 *: 3
GC content: 68.233%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 28 cases.
Marked 28 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 2 cases.
Edited 2 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 7
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 370
+[1] ++++++++++++GGGGGGG++GG+GGGGG
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 7
Contig length: 364
Sanger 454 Solexa SOLiD
Num. reads 0 16 0 0
100% merged reads - - 0 0
Avg. read len 0 228 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 10.022 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 10.022
Consensus contains: A: 105 C: 85 G: 74 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 3
GC content: 44.044%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 43 cases.
Marked 43 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 3 cases.
Edited 3 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 8
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 354
+[1] ++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 8
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 11 0 0
100% merged reads - - 0 0
Avg. read len 0 241 0 0
Max. coverage 0 11 0 0
Avg. coverage 0.000 6.502 0.000 0.000
Max. contig coverage: 11
Avg. contig coverage: 6.502
Consensus contains: A: 88 C: 121 G: 130 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 61.520%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 9
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 343
+[1] ++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 9
Contig length: 534
Sanger 454 Solexa SOLiD
Num. reads 0 13 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.530 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.530
Consensus contains: A: 90 C: 134 G: 204 T: 106 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 63.296%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 10
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 330
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 10
Contig length: 352
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.807 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.807
Consensus contains: A: 66 C: 117 G: 114 T: 55 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.625%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 11
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 321
+[1] +++++++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 11
Contig length: 476
Sanger 454 Solexa SOLiD
Num. reads 0 14 0 0
100% merged reads - - 0 0
Avg. read len 0 229 0 0
Max. coverage 0 13 0 0
Avg. coverage 0.000 6.750 0.000 0.000
Max. contig coverage: 13
Avg. contig coverage: 6.750
Consensus contains: A: 68 C: 144 G: 166 T: 98 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.126%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 12
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 307
+[1] +++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 12
Contig length: 277
Sanger 454 Solexa SOLiD
Num. reads 0 8 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 6.852 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 6.852
Consensus contains: A: 57 C: 78 G: 84 T: 58 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 58.484%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 13
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 299
+[1] +++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 13
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 230 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.640 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.640
Consensus contains: A: 61 C: 136 G: 140 T: 71 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.647%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 14
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 289
+[1] +++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 14
Contig length: 474
Sanger 454 Solexa SOLiD
Num. reads 0 8 0 0
100% merged reads - - 0 0
Avg. read len 0 239 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.049 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.049
Consensus contains: A: 110 C: 93 G: 147 T: 124 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 50.633%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 15
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 281
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 15
Contig length: 322
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.776 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.776
Consensus contains: A: 69 C: 96 G: 94 T: 62 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 59.190%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 16
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 272
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 16
Contig length: 475
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 224 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.255 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.255
Consensus contains: A: 68 C: 152 G: 171 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 68.000%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 17
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 263
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 17
Contig length: 496
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 221 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.020 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.020
Consensus contains: A: 76 C: 153 G: 184 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.944%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 18
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 254
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 18
Contig length: 330
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.182 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.182
Consensus contains: A: 53 C: 96 G: 122 T: 59 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.061%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 19
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 245
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 19
Contig length: 358
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.696 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.696
Consensus contains: A: 74 C: 131 G: 106 T: 47 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.201%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 20
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 236
Started with non-multicopy.
+[1] +++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 20
Contig length: 543
Sanger 454 Solexa SOLiD
Num. reads 0 20 0 0
100% merged reads - - 0 0
Avg. read len 0 234 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 8.637 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 8.637
Consensus contains: A: 112 C: 196 G: 150 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 2
GC content: 63.956%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 11 cases.
Marked 11 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 1 cases.
Edited 1 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 21
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 216
Started with non-multicopy.
+[1] +++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 21
Contig length: 551
Sanger 454 Solexa SOLiD
Num. reads 0 12 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.294 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.294
Consensus contains: A: 89 C: 180 G: 201 T: 80 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 69.273%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 22
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 204
Started with non-multicopy.
+[1] +++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 22
Contig length: 384
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 207 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.401 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.401
Consensus contains: A: 56 C: 123 G: 148 T: 57 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 70.573%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 23
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 194
Started with non-multicopy.
+[1] ++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 23
Contig length: 376
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 222 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.316 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.316
Consensus contains: A: 66 C: 128 G: 114 T: 68 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 64.362%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 24
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 185
+[1] ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 599 12 /
267 / 0
[61] +++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 24
Contig length: 635
Sanger 454 Solexa SOLiD
Num. reads 0 68 0 0
100% merged reads - - 0 0
Avg. read len 0 233 0 0
Max. coverage 0 43 0 0
Avg. coverage 0.000 25.011 0.000 0.000
Max. contig coverage: 43
Avg. contig coverage: 25.011
Consensus contains: A: 108 C: 214 G: 208 T: 103 N: 0
IUPAC: 0 Funny: 0 *: 2
GC content: 66.667%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 64 cases.
Marked 64 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 2 cases.
Edited 2 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 25
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 117
+[1] +++++++++++++++++++++++++++++++++++++++++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 25
Contig length: 511
Sanger 454 Solexa SOLiD
Num. reads 0 58 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 54 0 0
Avg. coverage 0.000 27.542 0.000 0.000
Max. contig coverage: 54
Avg. contig coverage: 27.542
Consensus contains: A: 116 C: 140 G: 167 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 4
GC content: 60.552%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 177 cases.
Marked 177 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 7 cases.
Edited 7 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 26
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 59
+[1] ++++++++++++++++++++++++++++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:14:51 2009
-------------- Contig statistics ----------------
Contig id: 26
Contig length: 474
Sanger 454 Solexa SOLiD
Num. reads 0 45 0 0
100% merged reads - - 0 0
Avg. read len 0 247 0 0
Max. coverage 0 45 0 0
Avg. coverage 0.000 23.492 0.000 0.000
Max. contig coverage: 45
Avg. contig coverage: 23.492
Consensus contains: A: 104 C: 121 G: 132 T: 109 N: 0
IUPAC: 0 Funny: 0 *: 8
GC content: 54.292%
-------------------------------------------------
Localtime: Thu Oct 1 18:14:51 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 219 cases.
Marked 219 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 7 cases.
Edited 7 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 14
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 13
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 12
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 11
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 10
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 9
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 8
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 7
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 6
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 5
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 4
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 3
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 2
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Building new contig 27
Localtime: Thu Oct 1 18:14:51 2009
Unused reads: 1
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:14:51 2009
Saving debris list to file: dsm6611_d_log/dsm6611_info_debrislist_pass.1.txt
dmi 80
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76767404 kB
Buffers: 169048 kB
Cached: 3014816 kB
SwapCached: 0 kB
Active: 5050104 kB
Inactive: 503516 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76767404 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 534300 kB
Writeback: 0 kB
AnonPages: 2369808 kB
Mapped: 48544 kB
Slab: 151520 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859460 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639892760 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 22 720 B 0 B 0 B
Total: 1682335048 (1.6 GiB)
================================================================================
dmi 90
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76767404 kB
Buffers: 169048 kB
Cached: 3014816 kB
SwapCached: 0 kB
Active: 5050104 kB
Inactive: 503520 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76767404 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 534300 kB
Writeback: 0 kB
AnonPages: 2369808 kB
Mapped: 48544 kB
Slab: 151520 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639892760 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682335080 (1.6 GiB)
================================================================================
dmi e0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76767404 kB
Buffers: 169048 kB
Cached: 3014816 kB
SwapCached: 0 kB
Active: 5050104 kB
Inactive: 503528 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76767404 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 534300 kB
Writeback: 0 kB
AnonPages: 2369808 kB
Mapped: 48544 kB
Slab: 151520 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639892760 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 445 10 KiB 1 KiB 4 B
AS_confirmed_edges: 890 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682335080 (1.6 GiB)
================================================================================
Pass: 2
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 Solexa SOLiD
---------------------------------
Total reads 0 605864 0 0
Reads wo qual 0 0 0 0
Used reads 0 602919 0 0
Avg len used 0 225 0 0
With strain 0 0 0 0
W/o clips 0 153150 0 0
===========================================================================
dmi 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76775464 kB
Buffers: 169052 kB
Cached: 3006108 kB
SwapCached: 0 kB
Active: 5045728 kB
Inactive: 499096 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76775464 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 534300 kB
Writeback: 0 kB
AnonPages: 2369808 kB
Mapped: 48544 kB
Slab: 151520 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3394188 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639892760 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682335080 (1.6 GiB)
================================================================================
Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Analysing hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Hash statistics:
=========================================================
Measured avg. frequency coverage: 24
Deduced thresholds:
-------------------
Min normal cov: 12
Max normal cov: 36
Repeat cov: 46
Crazy cov: 192
Mask cov: 2400
Repeat ratio histogram:
-----------------------
0 1564634
1 9435362
2 374656
3 59866
4 11958
5 5080
6 7462
7 5724
8 960
9 810
10 610
11 1068
12 914
13 964
14 610
15 606
16 1638
17 842
18 812
19 370
20 442
21 268
22 410
23 492
24 512
25 110
26 18
27 24
28 18
29 40
30 10
31 24
32 18
33 10
34 18
35 34
36 16
37 10
38 4
39 6
40 16
41 6
42 12
43 2
44 8
46 4
47 20
48 2
49 12
50 4
51 4
52 6
53 10
54 14
55 4
56 8
57 10
59 12
61 2
65 2
67 2
68 4
69 2
70 4
71 2
73 4
75 2
77 6
79 2
80 2
82 6
83 2
84 8
85 4
87 2
88 4
89 2
90 2
91 4
95 2
96 4
97 6
98 6
99 2
100 4
102 4
103 2
104 2
106 2
107 2
108 2
109 2
110 4
112 2
170 2
171 2
172 2
201 2
246 2
247 2
250 4
=========================================================
Assigning values:
Localtime: Thu Oct 1 18:16:39 2009
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Buntifying reads (this may take a while) ... done.
dmi 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76760748 kB
Buffers: 173480 kB
Cached: 3006036 kB
SwapCached: 0 kB
Active: 5053848 kB
Inactive: 499528 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76760748 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 544976 kB
Writeback: 0 kB
AnonPages: 2369812 kB
Mapped: 48576 kB
Slab: 156676 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3393688 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:18:03 2009
Searching for possible overlaps
dmi fpo 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76760748 kB
Buffers: 173480 kB
Cached: 3006580 kB
SwapCached: 0 kB
Active: 5053848 kB
Inactive: 499532 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76760748 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 545520 kB
Writeback: 0 kB
AnonPages: 2369812 kB
Mapped: 48576 kB
Slab: 156676 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3393688 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi fpo 05
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76760252 kB
Buffers: 173492 kB
Cached: 3006568 kB
SwapCached: 0 kB
Active: 5053904 kB
Inactive: 499480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76760252 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 545520 kB
Writeback: 0 kB
AnonPages: 2369812 kB
Mapped: 48576 kB
Slab: 156676 kB
PageTables: 16724 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3393688 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2325640 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
:
Localtime: Thu Oct 1 18:18:05 2009
Now running threaded and partitioned skimmer with 10 partitions in 2 threads:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done.
Skim summary:
accepted: 19385525
possible: 61617088
permbans: 0
Hits chosen: 19385525
Localtime: Thu Oct 1 18:29:49 2009
Total megahubs: 0
dmi fpo 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76497768 kB
Buffers: 175728 kB
Cached: 3006092 kB
SwapCached: 0 kB
Active: 5017436 kB
Inactive: 801332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76497768 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 551932 kB
Writeback: 0 kB
AnonPages: 2632888 kB
Mapped: 48576 kB
Slab: 155516 kB
PageTables: 17260 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3644452 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 98%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 2260848 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 2121636 kB
VmData: 2256560 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 4200 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi fpo 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76760408 kB
Buffers: 175728 kB
Cached: 3006092 kB
SwapCached: 0 kB
Active: 4755292 kB
Inactive: 801324 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76760408 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 551932 kB
Writeback: 0 kB
AnonPages: 2370680 kB
Mapped: 48576 kB
Slab: 155516 kB
PageTables: 16716 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382300 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 94%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
rsh increased memtouse to: 81386065920
Can load up to -903881216 skim edges at once.
We have 17772912 skims in file.
dmi rsh2 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759912 kB
Buffers: 175728 kB
Cached: 3006092 kB
SwapCached: 0 kB
Active: 4755284 kB
Inactive: 801332 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759912 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 551932 kB
Writeback: 0 kB
AnonPages: 2370680 kB
Mapped: 48576 kB
Slab: 155516 kB
PageTables: 16716 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382608 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 94%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682417728 (1.6 GiB)
================================================================================
dmi rsh2 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759912 kB
Buffers: 175728 kB
Cached: 3006108 kB
SwapCached: 0 kB
Active: 4755284 kB
Inactive: 801336 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759912 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 551948 kB
Writeback: 0 kB
AnonPages: 2370836 kB
Mapped: 48576 kB
Slab: 155520 kB
PageTables: 16916 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382608 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 90%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1700190656 (1.6 GiB)
================================================================================
dmi rsh2 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759916 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4755284 kB
Inactive: 801340 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759916 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2370736 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382608 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 87%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1700796544 (1.6 GiB)
================================================================================
dmi rsh2 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759916 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4755284 kB
Inactive: 801344 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759916 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2370736 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382608 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 83%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1703220000 (1.6 GiB)
================================================================================
dmi rsh2 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76760024 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4755284 kB
Inactive: 801348 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76760024 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2370736 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3382608 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 81%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859484 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3684 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1705643456 (1.6 GiB)
================================================================================
dmi rsh2 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757668 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4757580 kB
Inactive: 801352 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757668 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2372912 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384984 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 77%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1708066912 (1.6 GiB)
================================================================================
dmi rsh2 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757668 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4757580 kB
Inactive: 801356 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757668 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2372912 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384984 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 73%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1708672776 (1.6 GiB)
================================================================================
dmi rsh2 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757668 kB
Buffers: 175728 kB
Cached: 3006148 kB
SwapCached: 0 kB
Active: 4757612 kB
Inactive: 801328 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757668 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 552008 kB
Writeback: 0 kB
AnonPages: 2372912 kB
Mapped: 48576 kB
Slab: 155584 kB
PageTables: 16744 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384984 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 69%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1709278640 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:29:53 2009
De-normalising SKIM hits ... (this will take a while)
Loading skims in id range 0 to 1
Loaded 51 elements.
Sorting ... done.
Loading skims in id range 1 to 2
Loaded 11 elements.
Sorting ... done.
Loading skims in id range 2 to 3
Loaded 554 elements.
Sorting ... done.
Loading skims in id range 3 to 4
Loaded 16 elements.
Sorting ... done.
Loading skims in id range 4 to 5
Loaded 67 elements.
Sorting ... done.
Loading skims in id range 5 to 6
Loaded 121 elements.
Sorting ... done.
Loading skims in id range 6 to 7
Loaded 13 elements.
Sorting ... done.
Loading skims in id range 7 to 8
Loaded 56 elements.
Sorting ... done.
Loading skims in id range 8 to 9
Loaded 8 elements.
Sorting ... done.
Loading skims in id range 9 to 10
Loaded 14 elements.
Sorting ... done.
Loading skims in id range 10 to 11
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 11 to 12
Loaded 22 elements.
Sorting ... done.
Loading skims in id range 12 to 13
Loaded 12 elements.
Sorting ... done.
Loading skims in id range 13 to 14
Loaded 24 elements.
Sorting ... done.
Loading skims in id range 14 to 15
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 15 to 16
Loaded 47 elements.
Sorting ... done.
Loading skims in id range 16 to 17
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 17 to 18
Loaded 7 elements.
Sorting ... done.
Loading skims in id range 18 to 19
Loaded 27 elements.
Sorting ... done.
Loading skims in id range 19 to 20
Loaded 11 elements.
Sorting ... done.
Loading skims in id range 20 to 21
Loaded 13 elements.
Sorting ... done.
Loading skims in id range 21 to 22
Loaded 31 elements.
Sorting ... done.
Loading skims in id range 22 to 23
Loaded 9 elements.
Sorting ... done.
Loading skims in id range 23 to 24
Loaded 43 elements.
Sorting ... done.
Loading skims in id range 24 to 25
Loaded 117 elements.
Sorting ... done.
Loading skims in id range 25 to 26
Loaded 48 elements.
Sorting ... done.
Loading skims in id range 26 to 27
Loaded 0 elements.
Sorting ... done.
Localtime: Thu Oct 1 18:39:00 2009
dmi rsh2 80
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76758140 kB
Buffers: 177028 kB
Cached: 3006188 kB
SwapCached: 0 kB
Active: 5057844 kB
Inactive: 502424 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76758140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 318468 kB
Writeback: 0 kB
AnonPages: 2373040 kB
Mapped: 48576 kB
Slab: 154640 kB
PageTables: 16752 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 53 KiB 53 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1709278640 (1.6 GiB)
================================================================================
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
dmi rsh2 90
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76758140 kB
Buffers: 177028 kB
Cached: 3006188 kB
SwapCached: 0 kB
Active: 5057856 kB
Inactive: 502416 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76758140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 318468 kB
Writeback: 0 kB
AnonPages: 2373040 kB
Mapped: 48576 kB
Slab: 154640 kB
PageTables: 16752 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1709278640 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:00 2009
Step 0
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Localtime: Thu Oct 1 18:39:00 2009
Only long reads
Step 10
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Step 20
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Step 30
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Step 40
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Step 50
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Step 60
Loading block 0
Loading 51 elements at offset 0
Loaded 51 elements
Loading block 1
Loading 11 elements at offset 1224
Loaded 11 elements
Loading block 2
Loading 554 elements at offset 1488
Loaded 554 elements
Loading block 3
Loading 16 elements at offset 14784
Loaded 16 elements
Loading block 4
Loading 67 elements at offset 15168
Loaded 67 elements
Loading block 5
Loading 121 elements at offset 16776
Loaded 121 elements
Loading block 6
Loading 13 elements at offset 19680
Loaded 13 elements
Loading block 7
Loading 56 elements at offset 19992
Loaded 56 elements
Loading block 8
Loading 8 elements at offset 21336
Loaded 8 elements
Loading block 9
Loading 14 elements at offset 21528
Loaded 14 elements
Loading block 10
Loading 9 elements at offset 21864
Loaded 9 elements
Loading block 11
Loading 22 elements at offset 22080
Loaded 22 elements
Loading block 12
Loading 12 elements at offset 22608
Loaded 12 elements
Loading block 13
Loading 24 elements at offset 22896
Loaded 24 elements
Loading block 14
Loading 9 elements at offset 23472
Loaded 9 elements
Loading block 15
Loading 47 elements at offset 23688
Loaded 47 elements
Loading block 16
Loading 9 elements at offset 24816
Loaded 9 elements
Loading block 17
Loading 7 elements at offset 25032
Loaded 7 elements
Loading block 18
Loading 27 elements at offset 25200
Loaded 27 elements
Loading block 19
Loading 11 elements at offset 25848
Loaded 11 elements
Loading block 20
Loading 13 elements at offset 26112
Loaded 13 elements
Loading block 21
Loading 31 elements at offset 26424
Loaded 31 elements
Loading block 22
Loading 9 elements at offset 27168
Loaded 9 elements
Loading block 23
Loading 43 elements at offset 27384
Loaded 43 elements
Loading block 24
Loading 117 elements at offset 28416
Loaded 117 elements
Loading block 25
Loading 48 elements at offset 31224
Loaded 48 elements
Total skims taken: 449
dmi rsh2 b0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76758140 kB
Buffers: 177028 kB
Cached: 3006188 kB
SwapCached: 0 kB
Active: 5057876 kB
Inactive: 502416 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76758140 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 318468 kB
Writeback: 0 kB
AnonPages: 2373040 kB
Mapped: 48576 kB
Slab: 154592 kB
PageTables: 16752 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1709278640 (1.6 GiB)
================================================================================
Filtering forward skims.
Localtime: Thu Oct 1 18:39:01 2009
Writing reduced skim file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Done.
Done.
Filtering complement skims.
Localtime: Thu Oct 1 18:39:04 2009
Writing reduced skim file:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Done.
Done.
dmi rsh2 c0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757796 kB
Buffers: 177048 kB
Cached: 3006236 kB
SwapCached: 0 kB
Active: 5057896 kB
Inactive: 502480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757796 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306172 kB
Writeback: 0 kB
AnonPages: 2373040 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16752 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 605864 592 KiB 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1709278640 (1.6 GiB)
================================================================================
dmi rsh2 d0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757796 kB
Buffers: 177048 kB
Cached: 3006236 kB
SwapCached: 0 kB
Active: 5057896 kB
Inactive: 502484 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757796 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306172 kB
Writeback: 0 kB
AnonPages: 2373040 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16752 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 605864 592 KiB 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1708672776 (1.6 GiB)
================================================================================
dmi rsh2 e0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76757796 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5057896 kB
Inactive: 502488 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76757796 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2373032 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1861776 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 605864 2 MiB 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1708066912 (1.6 GiB)
================================================================================
dmi rsh2 f0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759408 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759408 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 605864 2 MiB 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1705643456 (1.6 GiB)
================================================================================
dmi rsh2 g0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759408 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502484 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759408 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 605864 2 MiB 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1703220000 (1.6 GiB)
================================================================================
dmi rsh2 h0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759408 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502488 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759408 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 605864 592 KiB 24 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1700796544 (1.6 GiB)
================================================================================
dmi rsh2 i0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759408 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502492 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759408 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154816 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 17772912 17 MiB 16 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1700190656 (1.6 GiB)
================================================================================
dmi rsh2 j0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759624 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502496 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759624 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154752 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 48 53 KiB 52 KiB 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682417728 (1.6 GiB)
================================================================================
dmi rsh2 k0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759624 kB
Buffers: 177048 kB
Cached: 3006248 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502504 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759624 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306184 kB
Writeback: 0 kB
AnonPages: 2370856 kB
Mapped: 48576 kB
Slab: 154720 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi fpo 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759500 kB
Buffers: 177056 kB
Cached: 3006272 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502508 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759500 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306216 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 154720 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759500 kB
Buffers: 177056 kB
Cached: 3006272 kB
SwapCached: 0 kB
Active: 5055672 kB
Inactive: 502512 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759500 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306216 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 154720 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386168 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
Making alignments.
dmi ma 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006232 kB
SwapCached: 0 kB
Active: 5055660 kB
Inactive: 502480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306216 kB
Writeback: 0 kB
AnonPages: 2370776 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16592 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3385748 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 6%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1689633352 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:11 2009
Aligning possible forward matches:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Alignment stats:
Potential: 246
Calculated: 60
Evaded (PB): 0
Rejected (checkfun): 0
Trans 100 saved: 186
Banned overlap pairs: 0 in 0 reads.
dmi ma 40
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006244 kB
SwapCached: 0 kB
Active: 5055684 kB
Inactive: 502480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306220 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16736 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3385748 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1689633352 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:11 2009
Aligning possible complement matches:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Alignment stats:
Potential: 203
Calculated: 37
Evaded (PB): 0
Rejected (checkfun): 0
Trans 100 saved: 166
Banned overlap pairs: 0 in 0 reads.
dmi ma 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006244 kB
SwapCached: 0 kB
Active: 5055704 kB
Inactive: 502480 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306220 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16736 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3385748 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1689633352 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:11 2009
dmi ma 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006252 kB
SwapCached: 0 kB
Active: 5055704 kB
Inactive: 502484 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306228 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16624 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3385748 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 605864 2 MiB 0 B 0 B
AS_probablermbsnotok: 605864 2 MiB 0 B 0 B
AS_weakrmbsnotok: 605864 2 MiB 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1689633352 (1.6 GiB)
================================================================================
dmi ma 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006252 kB
SwapCached: 0 kB
Active: 5055704 kB
Inactive: 502488 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306228 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16624 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386140 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi 50
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759136 kB
Buffers: 177056 kB
Cached: 3006252 kB
SwapCached: 0 kB
Active: 5055704 kB
Inactive: 502500 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759136 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306228 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16624 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386140 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:12 2009
Counting number of alignments in file ... done.
Expecting 449 alignments.
Localtime: Thu Oct 1 18:39:12 2009
Loading confirmed overlaps from disk (will need approximately 26. KiB RAM):
dmi laff 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759012 kB
Buffers: 177056 kB
Cached: 3006252 kB
SwapCached: 0 kB
Active: 5055744 kB
Inactive: 502468 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759012 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306228 kB
Writeback: 0 kB
AnonPages: 2370808 kB
Mapped: 48576 kB
Slab: 154844 kB
PageTables: 16624 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386140 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi laff 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76759716 kB
Buffers: 177056 kB
Cached: 3006252 kB
SwapCached: 0 kB
Active: 5055744 kB
Inactive: 502468 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76759716 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 306228 kB
Writeback: 0 kB
AnonPages: 2370512 kB
Mapped: 48576 kB
Slab: 154912 kB
PageTables: 16524 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386140 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Localtime: Thu Oct 1 18:39:13 2009
Sorting confirmed overlaps (this may take a while) ... done.
Localtime: Thu Oct 1 18:39:13 2009
Generating clusters:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
dmi 60
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76758336 kB
Buffers: 177072 kB
Cached: 3006308 kB
SwapCached: 0 kB
Active: 5055768 kB
Inactive: 502448 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76758336 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 316632 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 154944 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
dmi 70
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76758336 kB
Buffers: 177072 kB
Cached: 3006308 kB
SwapCached: 0 kB
Active: 5055768 kB
Inactive: 502452 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76758336 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 316632 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 154944 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639920664 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 23 752 B 0 B 0 B
Total: 1682362984 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:39:14 2009
Building new contig 1
Localtime: Thu Oct 1 18:39:14 2009
Unused reads: 475
+[1] +++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:14 2009
-------------- Contig statistics ----------------
Contig id: 1
Contig length: 416
Sanger 454 Solexa SOLiD
Num. reads 0 16 0 0
100% merged reads - - 0 0
Avg. read len 0 262 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 10.099 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 10.099
Consensus contains: A: 78 C: 104 G: 119 T: 115 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 53.606%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:14 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 1 now.
Localtime: Thu Oct 1 18:39:14 2009
Unused reads: 475
+[1] +++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:14 2009
-------------- Contig statistics ----------------
Contig id: 1
Contig length: 416
Sanger 454 Solexa SOLiD
Num. reads 0 16 0 0
100% merged reads - - 0 0
Avg. read len 0 262 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 10.099 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 10.099
Consensus contains: A: 78 C: 104 G: 119 T: 115 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 53.606%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:14 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 1 now.
Localtime: Thu Oct 1 18:39:14 2009
Unused reads: 475
+[1] +++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 1
Contig length: 416
Sanger 454 Solexa SOLiD
Num. reads 0 16 0 0
100% merged reads - - 0 0
Avg. read len 0 262 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 10.099 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 10.099
Consensus contains: A: 78 C: 104 G: 119 T: 115 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 53.606%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 2
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 459
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 2
Contig length: 423
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 247 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.965 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.965
Consensus contains: A: 91 C: 139 G: 124 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 62.175%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 2 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 459
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 2
Contig length: 423
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 247 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.965 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.965
Consensus contains: A: 91 C: 139 G: 124 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 62.175%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 2 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 459
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 2
Contig length: 423
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 247 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.965 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.965
Consensus contains: A: 91 C: 139 G: 124 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 62.175%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 3
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 442
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 3
Contig length: 395
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 10.484 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 10.484
Consensus contains: A: 87 C: 115 G: 114 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 57.975%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 3 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 442
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 3
Contig length: 395
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 10.484 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 10.484
Consensus contains: A: 87 C: 115 G: 114 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 57.975%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 3 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 442
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 3
Contig length: 395
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 10.484 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 10.484
Consensus contains: A: 87 C: 115 G: 114 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 57.975%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 4
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 425
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 4
Contig length: 494
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 254 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.765 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.765
Consensus contains: A: 81 C: 155 G: 159 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 2
GC content: 63.821%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 4 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 425
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 4
Contig length: 494
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 254 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.765 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.765
Consensus contains: A: 81 C: 155 G: 159 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 2
GC content: 63.821%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 4 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 425
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 4
Contig length: 494
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 254 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.765 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.765
Consensus contains: A: 81 C: 155 G: 159 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 2
GC content: 63.821%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 5
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 408
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 5
Contig length: 448
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.993 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.993
Consensus contains: A: 75 C: 146 G: 159 T: 67 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 68.233%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 5 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 408
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 5
Contig length: 448
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.993 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.993
Consensus contains: A: 75 C: 146 G: 159 T: 67 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 68.233%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 5 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 408
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 5
Contig length: 448
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 8.993 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 8.993
Consensus contains: A: 75 C: 146 G: 159 T: 67 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 68.233%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 6
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 391
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 6
Contig length: 430
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 232 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.193 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.193
Consensus contains: A: 71 C: 140 G: 140 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.116%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 6 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 391
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 6
Contig length: 430
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 232 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.193 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.193
Consensus contains: A: 71 C: 140 G: 140 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.116%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 6 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 391
+[1] ++++++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 6
Contig length: 430
Sanger 454 Solexa SOLiD
Num. reads 0 17 0 0
100% merged reads - - 0 0
Avg. read len 0 232 0 0
Max. coverage 0 17 0 0
Avg. coverage 0.000 9.193 0.000 0.000
Max. contig coverage: 17
Avg. contig coverage: 9.193
Consensus contains: A: 71 C: 140 G: 140 T: 79 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.116%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 7
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 374
+[1] +++++++++++++G+GGG+GGGG+GG+GGGGG
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 7
Contig length: 362
Sanger 454 Solexa SOLiD
Num. reads 0 18 0 0
100% merged reads - - 0 0
Avg. read len 0 225 0 0
Max. coverage 0 18 0 0
Avg. coverage 0.000 11.193 0.000 0.000
Max. contig coverage: 18
Avg. contig coverage: 11.193
Consensus contains: A: 105 C: 85 G: 74 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 44.044%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Marking tricky 454 runs in 17 cases.
Marked 17 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] Performing 454 edits in 1 cases.
Edited 1 reads.
Deleting superfluous gap columns ... done.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 7 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 374
+[1] +++++++++++++G+GGG+GGGG+GG+GGGGG
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 7
Contig length: 361
Sanger 454 Solexa SOLiD
Num. reads 0 18 0 0
100% merged reads - - 0 0
Avg. read len 0 225 0 0
Max. coverage 0 18 0 0
Avg. coverage 0.000 11.222 0.000 0.000
Max. contig coverage: 18
Avg. contig coverage: 11.222
Consensus contains: A: 105 C: 85 G: 74 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 44.044%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 7 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 374
+[1] +++++++++++++G+GGG+GGGG+GG+GGGGG
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 7
Contig length: 361
Sanger 454 Solexa SOLiD
Num. reads 0 18 0 0
100% merged reads - - 0 0
Avg. read len 0 225 0 0
Max. coverage 0 18 0 0
Avg. coverage 0.000 11.222 0.000 0.000
Max. contig coverage: 18
Avg. contig coverage: 11.222
Consensus contains: A: 105 C: 85 G: 74 T: 97 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 44.044%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 8
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 356
+[1] ++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 8
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 11 0 0
100% merged reads - - 0 0
Avg. read len 0 241 0 0
Max. coverage 0 11 0 0
Avg. coverage 0.000 6.502 0.000 0.000
Max. contig coverage: 11
Avg. contig coverage: 6.502
Consensus contains: A: 88 C: 121 G: 130 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 61.520%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 8 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 356
+[1] ++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 8
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 11 0 0
100% merged reads - - 0 0
Avg. read len 0 241 0 0
Max. coverage 0 11 0 0
Avg. coverage 0.000 6.502 0.000 0.000
Max. contig coverage: 11
Avg. contig coverage: 6.502
Consensus contains: A: 88 C: 121 G: 130 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 61.520%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 8 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 356
+[1] ++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 8
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 11 0 0
100% merged reads - - 0 0
Avg. read len 0 241 0 0
Max. coverage 0 11 0 0
Avg. coverage 0.000 6.502 0.000 0.000
Max. contig coverage: 11
Avg. contig coverage: 6.502
Consensus contains: A: 88 C: 121 G: 130 T: 69 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 61.520%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 9
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 345
+[1] ++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 9
Contig length: 534
Sanger 454 Solexa SOLiD
Num. reads 0 13 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.530 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.530
Consensus contains: A: 90 C: 134 G: 204 T: 106 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 63.296%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 9 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 345
+[1] ++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 9
Contig length: 534
Sanger 454 Solexa SOLiD
Num. reads 0 13 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.530 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.530
Consensus contains: A: 90 C: 134 G: 204 T: 106 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 63.296%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 9 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 345
+[1] ++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 9
Contig length: 534
Sanger 454 Solexa SOLiD
Num. reads 0 13 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.530 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.530
Consensus contains: A: 90 C: 134 G: 204 T: 106 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 63.296%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 10
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 332
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 10
Contig length: 352
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.807 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.807
Consensus contains: A: 66 C: 117 G: 114 T: 55 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.625%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 10 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 332
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 10
Contig length: 352
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.807 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.807
Consensus contains: A: 66 C: 117 G: 114 T: 55 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.625%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 10 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 332
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 10
Contig length: 352
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 227 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.807 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.807
Consensus contains: A: 66 C: 117 G: 114 T: 55 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.625%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 11
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 323
+[1] +++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 11
Contig length: 476
Sanger 454 Solexa SOLiD
Num. reads 0 14 0 0
100% merged reads - - 0 0
Avg. read len 0 229 0 0
Max. coverage 0 13 0 0
Avg. coverage 0.000 6.750 0.000 0.000
Max. contig coverage: 13
Avg. contig coverage: 6.750
Consensus contains: A: 68 C: 144 G: 166 T: 98 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.126%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 11 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 323
+[1] +++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 11
Contig length: 476
Sanger 454 Solexa SOLiD
Num. reads 0 14 0 0
100% merged reads - - 0 0
Avg. read len 0 229 0 0
Max. coverage 0 13 0 0
Avg. coverage 0.000 6.750 0.000 0.000
Max. contig coverage: 13
Avg. contig coverage: 6.750
Consensus contains: A: 68 C: 144 G: 166 T: 98 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.126%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 11 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 323
+[1] +++++++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 11
Contig length: 476
Sanger 454 Solexa SOLiD
Num. reads 0 14 0 0
100% merged reads - - 0 0
Avg. read len 0 229 0 0
Max. coverage 0 13 0 0
Avg. coverage 0.000 6.750 0.000 0.000
Max. contig coverage: 13
Avg. contig coverage: 6.750
Consensus contains: A: 68 C: 144 G: 166 T: 98 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 65.126%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 12
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 309
+[1] +++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 12
Contig length: 277
Sanger 454 Solexa SOLiD
Num. reads 0 8 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 6.852 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 6.852
Consensus contains: A: 57 C: 78 G: 84 T: 58 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 58.484%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 13
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 301
+[1] +++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 13
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 230 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.640 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.640
Consensus contains: A: 61 C: 136 G: 140 T: 71 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.647%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 13 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 301
+[1] +++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 13
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 230 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.640 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.640
Consensus contains: A: 61 C: 136 G: 140 T: 71 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.647%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 13 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 301
+[1] +++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 13
Contig length: 408
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 230 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.640 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.640
Consensus contains: A: 61 C: 136 G: 140 T: 71 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.647%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 14
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 291
+[1] +++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 14
Contig length: 474
Sanger 454 Solexa SOLiD
Num. reads 0 8 0 0
100% merged reads - - 0 0
Avg. read len 0 239 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.049 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.049
Consensus contains: A: 110 C: 93 G: 147 T: 124 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 50.633%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 15
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 283
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 15
Contig length: 322
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.776 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.776
Consensus contains: A: 69 C: 96 G: 94 T: 62 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 59.190%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 15 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 283
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 15
Contig length: 322
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.776 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.776
Consensus contains: A: 69 C: 96 G: 94 T: 62 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 59.190%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 15 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 283
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 15
Contig length: 322
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.776 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.776
Consensus contains: A: 69 C: 96 G: 94 T: 62 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 59.190%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 16
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 274
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 16
Contig length: 475
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 224 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.255 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.255
Consensus contains: A: 68 C: 152 G: 171 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 68.000%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 16 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 274
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 16
Contig length: 475
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 224 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.255 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.255
Consensus contains: A: 68 C: 152 G: 171 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 68.000%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 16 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 274
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 16
Contig length: 475
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 224 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.255 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.255
Consensus contains: A: 68 C: 152 G: 171 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 68.000%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 17
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 265
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 17
Contig length: 496
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 221 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.020 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.020
Consensus contains: A: 76 C: 153 G: 184 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.944%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 17 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 265
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 17
Contig length: 496
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 221 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.020 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.020
Consensus contains: A: 76 C: 153 G: 184 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.944%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 17 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 265
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 17
Contig length: 496
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 221 0 0
Max. coverage 0 8 0 0
Avg. coverage 0.000 4.020 0.000 0.000
Max. contig coverage: 8
Avg. contig coverage: 4.020
Consensus contains: A: 76 C: 153 G: 184 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 67.944%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 18
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 256
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 18
Contig length: 330
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.182 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.182
Consensus contains: A: 53 C: 96 G: 122 T: 59 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.061%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 18 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 256
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 18
Contig length: 330
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.182 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.182
Consensus contains: A: 53 C: 96 G: 122 T: 59 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.061%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 18 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 256
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 18
Contig length: 330
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 6.182 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 6.182
Consensus contains: A: 53 C: 96 G: 122 T: 59 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.061%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 19
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 247
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 19
Contig length: 358
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.696 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.696
Consensus contains: A: 74 C: 131 G: 106 T: 47 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.201%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 19 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 247
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 19
Contig length: 358
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.696 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.696
Consensus contains: A: 74 C: 131 G: 106 T: 47 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.201%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 19 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 247
+[1] ++++++++
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 19
Contig length: 358
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 226 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.696 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.696
Consensus contains: A: 74 C: 131 G: 106 T: 47 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.201%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 20
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 238
Started with non-multicopy.
+[1] ++++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 20
Contig length: 542
Sanger 454 Solexa SOLiD
Num. reads 0 21 0 0
100% merged reads - - 0 0
Avg. read len 0 237 0 0
Max. coverage 0 16 0 0
Avg. coverage 0.000 9.190 0.000 0.000
Max. contig coverage: 16
Avg. contig coverage: 9.190
Consensus contains: A: 112 C: 196 G: 150 T: 83 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 63.956%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 21
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 217
Started with non-multicopy.
+[1] +++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 21
Contig length: 551
Sanger 454 Solexa SOLiD
Num. reads 0 12 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.294 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.294
Consensus contains: A: 89 C: 180 G: 201 T: 80 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 69.273%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 21 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 217
Started with non-multicopy.
+[1] +++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 21
Contig length: 551
Sanger 454 Solexa SOLiD
Num. reads 0 12 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.294 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.294
Consensus contains: A: 89 C: 180 G: 201 T: 80 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 69.273%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 21 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 217
Started with non-multicopy.
+[1] +++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 21
Contig length: 551
Sanger 454 Solexa SOLiD
Num. reads 0 12 0 0
100% merged reads - - 0 0
Avg. read len 0 243 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.294 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.294
Consensus contains: A: 89 C: 180 G: 201 T: 80 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 69.273%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 22
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 205
Started with non-multicopy.
+[1] +++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 22
Contig length: 384
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 207 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.401 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.401
Consensus contains: A: 56 C: 123 G: 148 T: 57 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 70.573%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 22 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 205
Started with non-multicopy.
+[1] +++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 22
Contig length: 384
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 207 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.401 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.401
Consensus contains: A: 56 C: 123 G: 148 T: 57 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 70.573%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 22 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 205
Started with non-multicopy.
+[1] +++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 22
Contig length: 384
Sanger 454 Solexa SOLiD
Num. reads 0 10 0 0
100% merged reads - - 0 0
Avg. read len 0 207 0 0
Max. coverage 0 10 0 0
Avg. coverage 0.000 5.401 0.000 0.000
Max. contig coverage: 10
Avg. contig coverage: 5.401
Consensus contains: A: 56 C: 123 G: 148 T: 57 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 70.573%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 23
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 195
Started with non-multicopy.
+[1] ++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 23
Contig length: 376
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 222 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.316 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.316
Consensus contains: A: 66 C: 128 G: 114 T: 68 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 64.362%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 23 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 195
Started with non-multicopy.
+[1] ++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 23
Contig length: 376
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 222 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.316 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.316
Consensus contains: A: 66 C: 128 G: 114 T: 68 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 64.362%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Looping because of edits in reads.
Rebuilding contig 23 now.
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 195
Started with non-multicopy.
+[1] ++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 23
Contig length: 376
Sanger 454 Solexa SOLiD
Num. reads 0 9 0 0
100% merged reads - - 0 0
Avg. read len 0 222 0 0
Max. coverage 0 9 0 0
Avg. coverage 0.000 5.316 0.000 0.000
Max. contig coverage: 9
Avg. contig coverage: 5.316
Consensus contains: A: 66 C: 128 G: 114 T: 68 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 64.362%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 24
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 186
+[1] ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 606 11 /
265 / 0
[61] +++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 24
Contig length: 633
Sanger 454 Solexa SOLiD
Num. reads 0 68 0 0
100% merged reads - - 0 0
Avg. read len 0 233 0 0
Max. coverage 0 43 0 0
Avg. coverage 0.000 25.087 0.000 0.000
Max. contig coverage: 43
Avg. contig coverage: 25.087
Consensus contains: A: 108 C: 214 G: 208 T: 103 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 66.667%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 25
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 118
+[1] +++++++++++++++++++++++++++++++++++++++++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 25
Contig length: 507
Sanger 454 Solexa SOLiD
Num. reads 0 58 0 0
100% merged reads - - 0 0
Avg. read len 0 242 0 0
Max. coverage 0 54 0 0
Avg. coverage 0.000 27.750 0.000 0.000
Max. contig coverage: 54
Avg. contig coverage: 27.750
Consensus contains: A: 116 C: 140 G: 167 T: 84 N: 0
IUPAC: 0 Funny: 0 *: 0
GC content: 60.552%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 26
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 60
+[1] ++++++++++++++++++++++++++++++++++++++++++++
RL1
That's it for this contig.
Finished building.
Localtime: Thu Oct 1 18:39:15 2009
-------------- Contig statistics ----------------
Contig id: 26
Contig length: 468
Sanger 454 Solexa SOLiD
Num. reads 0 45 0 0
100% merged reads - - 0 0
Avg. read len 0 247 0 0
Max. coverage 0 45 0 0
Avg. coverage 0.000 23.774 0.000 0.000
Max. contig coverage: 45
Avg. contig coverage: 23.774
Consensus contains: A: 104 C: 121 G: 133 T: 109 N: 0
IUPAC: 0 Funny: 0 *: 1
GC content: 54.390%
-------------------------------------------------
Localtime: Thu Oct 1 18:39:15 2009
Marking tricky 454 / Solexa overcalls in temporary contig.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Marked 0 reads.
Marking possibly misassembled repeats: [0%] ....|.... [10%] ....|.... [20%]
....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%]
....|.... [80%] ....|.... [90%] ....|.... [100%] done step 1, starting step
2:done. Found none.
Editing tricky 454 / Solexa overcalls.
Searching for tricky 454 overcalls:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Edited 0 reads.
Transfering reads to readpool.
Done.
Storing contig ... Searching for SNPs and IUPACs, preparing needed data ...
done.
Starting search:
Transfering tags to readpool.
done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 15
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 14
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 13
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 12
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 11
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 10
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 9
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 8
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 7
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 6
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 5
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 4
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 3
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 2
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Building new contig 27
Localtime: Thu Oct 1 18:39:15 2009
Unused reads: 1
Started with non-multicopy.
+
RL1
That's it for this contig.
Finished building.
Is singlet.
Transfering reads to readpool.
Done.
Localtime: Thu Oct 1 18:39:15 2009
Saving debris list to file: dsm6611_d_log/dsm6611_info_debrislist_pass.2.txt
dmi 80
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76747688 kB
Buffers: 177112 kB
Cached: 3015784 kB
SwapCached: 0 kB
Active: 5060740 kB
Inactive: 507252 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76747688 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 326444 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 155588 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639901488 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682344000 (1.6 GiB)
================================================================================
dmi 90
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76747688 kB
Buffers: 177112 kB
Cached: 3015784 kB
SwapCached: 0 kB
Active: 5060744 kB
Inactive: 507264 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76747688 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 326444 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 155588 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639901488 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682344000 (1.6 GiB)
================================================================================
dmi e0
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76747688 kB
Buffers: 177112 kB
Cached: 3015784 kB
SwapCached: 0 kB
Active: 5060744 kB
Inactive: 507272 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76747688 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 326444 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 155588 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639901488 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 449 10 KiB 1 KiB 4 B
AS_confirmed_edges: 898 20 KiB 2 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682344000 (1.6 GiB)
================================================================================
Pass: 3
===========================================================================
Pool statistics:
Backbones: 0 Backbone rails: 0
Sanger 454 Solexa SOLiD
---------------------------------
Total reads 0 605864 0 0
Reads wo qual 0 0 0 0
Used reads 0 602919 0 0
Avg len used 0 225 0 0
With strain 0 0 0 0
W/o clips 0 153150 0 0
===========================================================================
dmi 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76748268 kB
Buffers: 177116 kB
Cached: 3015800 kB
SwapCached: 0 kB
Active: 5060752 kB
Inactive: 507268 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76748268 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 327076 kB
Writeback: 0 kB
AnonPages: 2370796 kB
Mapped: 48576 kB
Slab: 155376 kB
PageTables: 16748 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3386532 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639901488 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682344000 (1.6 GiB)
================================================================================
Writing temporary hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done
Analysing hstat files:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Hash statistics:
=========================================================
Measured avg. frequency coverage: 24
Deduced thresholds:
-------------------
Min normal cov: 12
Max normal cov: 36
Repeat cov: 46
Crazy cov: 192
Mask cov: 2400
Repeat ratio histogram:
-----------------------
0 1564634
1 9435362
2 374656
3 59866
4 11958
5 5080
6 7462
7 5724
8 960
9 810
10 610
11 1068
12 914
13 964
14 610
15 606
16 1638
17 842
18 812
19 370
20 442
21 268
22 410
23 492
24 512
25 110
26 18
27 24
28 18
29 40
30 10
31 24
32 18
33 10
34 18
35 34
36 16
37 10
38 4
39 6
40 16
41 6
42 12
43 2
44 8
46 4
47 20
48 2
49 12
50 4
51 4
52 6
53 10
54 14
55 4
56 8
57 10
59 12
61 2
65 2
67 2
68 4
69 2
70 4
71 2
73 4
75 2
77 6
79 2
80 2
82 6
83 2
84 8
85 4
87 2
88 4
89 2
90 2
91 4
95 2
96 4
97 6
98 6
99 2
100 4
102 4
103 2
104 2
106 2
107 2
108 2
109 2
110 4
112 2
170 2
171 2
172 2
201 2
246 2
247 2
250 4
=========================================================
Assigning values:
Localtime: Thu Oct 1 18:41:06 2009
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%]
Buntifying reads (this may take a while) ... done.
dmi 30
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76740160 kB
Buffers: 181520 kB
Cached: 3016084 kB
SwapCached: 0 kB
Active: 5064768 kB
Inactive: 507680 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76740160 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 277372 kB
Writeback: 0 kB
AnonPages: 2370804 kB
Mapped: 48576 kB
Slab: 159412 kB
PageTables: 16620 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3388480 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639914512 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682357024 (1.6 GiB)
================================================================================
Localtime: Thu Oct 1 18:42:29 2009
Searching for possible overlaps
dmi fpo 00
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76740160 kB
Buffers: 181520 kB
Cached: 3016628 kB
SwapCached: 0 kB
Active: 5064768 kB
Inactive: 507684 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76740160 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 277372 kB
Writeback: 0 kB
AnonPages: 2370804 kB
Mapped: 48576 kB
Slab: 159404 kB
PageTables: 16620 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3388480 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639914512 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682357024 (1.6 GiB)
================================================================================
dmi fpo 05
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76740160 kB
Buffers: 181520 kB
Cached: 3016628 kB
SwapCached: 0 kB
Active: 5064824 kB
Inactive: 507632 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76740160 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 277916 kB
Writeback: 0 kB
AnonPages: 2370804 kB
Mapped: 48576 kB
Slab: 159404 kB
PageTables: 16620 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3388480 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 0%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356016 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639914512 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682357024 (1.6 GiB)
================================================================================
:
Localtime: Thu Oct 1 18:42:31 2009
Now running threaded and partitioned skimmer with 10 partitions in 2 threads:
[0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|....
[50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] ....|....
[100%] done.
Skim summary:
accepted: 19385526
possible: 61617088
permbans: 0
Hits chosen: 19385526
Localtime: Thu Oct 1 18:54:03 2009
Total megahubs: 0
dmi fpo 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76477944 kB
Buffers: 183400 kB
Cached: 3016096 kB
SwapCached: 0 kB
Active: 5027544 kB
Inactive: 808960 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76477944 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 391588 kB
Writeback: 0 kB
AnonPages: 2632956 kB
Mapped: 48576 kB
Slab: 158860 kB
PageTables: 17260 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3646864 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 98%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 2260848 kB
VmLck: 0 kB
VmHWM: 2356072 kB
VmRSS: 2121692 kB
VmData: 2256560 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 4204 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639914512 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682357024 (1.6 GiB)
================================================================================
dmi fpo 20
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76740584 kB
Buffers: 183400 kB
Cached: 3016096 kB
SwapCached: 0 kB
Active: 4765400 kB
Inactive: 808952 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76740584 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 391588 kB
Writeback: 0 kB
AnonPages: 2370748 kB
Mapped: 48576 kB
Slab: 158860 kB
PageTables: 16716 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3384712 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 94%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356072 kB
VmRSS: 1859540 kB
VmData: 1994408 kB
VmStk: 84 kB
VmExe: 4168 kB
VmLib: 0 kB
VmPTE: 3688 kB
StaBrk: 00a55000 kB
Brk: 7a3d6000 kB
StaStk: 7fff1b911da0 kB
Threads: 1
SigQ: 0/660480
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000000000000
SigCgt: 0000000180000000
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
Cpus_allowed:
00000000,00000000,00000000,00000000,00000000,00000000,00000000,ffffffff
Mems_allowed: 00000000,0000000f
--------------------------------------------------------------------------------
Information on current assembly object:
AS_readpool: 605864 reads.
AS_contigs: 0 contigs.
AS_bbcontigs: 0 contigs.
Mem used for reads: 1639914512 (1.5 GiB)
Memory used in assembly structures:
Eff. Size Free cap. LostByAlign
AS_writtenskimhitsperid: 605864 2 MiB 0 B 0 B
AS_skim_edges: 0 24 B 0 B 0 B
AS_adsfacts: 0 10 KiB 10 KiB 4 B
AS_confirmed_edges: 0 20 KiB 20 KiB 0 B
AS_permanent_overlap_bans: 0 28 MiB 0 B 0 B
AS_readhitmiss: 0 24 B 0 B 0 B
AS_readhmcovered: 0 24 B 0 B 0 B
AS_count_rhm: 0 24 B 0 B 0 B
AS_clipleft: 605864 2 MiB 0 B 0 B
AS_clipright: 605864 2 MiB 0 B 0 B
AS_used_ids: 0 592 KiB 592 KiB 0 B
AS_multicopies: 605864 592 KiB 0 B 0 B
AS_hasmcoverlaps: 605864 592 KiB 0 B 0 B
AS_maxcoveragereached: 605864 2 MiB 0 B 0 B
AS_coverageperseqtype: 0 24 B 0 B 0 B
AS_istroublemaker: 605864 592 KiB 0 B 0 B
AS_isdebris: 605864 592 KiB 0 B 0 B
AS_needalloverlaps: 605864 592 KiB 24 B 0 B
AS_readsforrepeatresolve: 0 40 B 0 B 0 B
AS_allrmbsok: 0 24 B 0 B 0 B
AS_probablermbsnotok: 0 24 B 0 B 0 B
AS_weakrmbsnotok: 0 24 B 0 B 0 B
AS_readmaytakeskim: 0 40 B 0 B 0 B
AS_skimstaken: 0 40 B 0 B 0 B
AS_numskimoverlaps: 0 24 B 0 B 0 B
AS_numleftextendskims: 0 24 B 0 B 0 B
AS_rightextendskims: 0 24 B 0 B 0 B
AS_skimleftextendratio: 0 24 B 0 B 0 B
AS_skimrightextendratio: 0 24 B 0 B 0 B
AS_usedlogfiles: 29 944 B 0 B 0 B
Total: 1682357024 (1.6 GiB)
================================================================================
rsh increased memtouse to: 81386065920
Can load up to -903881216 skim edges at once.
We have 17772915 skims in file.
dmi rsh2 10
========================== Memory self assessment ==============================
Running in 64 bit mode.
Dump from /proc/meminfo
--------------------------------------------------------------------------------
MemTotal: 82525852 kB
MemFree: 76740212 kB
Buffers: 183400 kB
Cached: 3016096 kB
SwapCached: 0 kB
Active: 4765392 kB
Inactive: 808960 kB
HighTotal: 0 kB
HighFree: 0 kB
LowTotal: 82525852 kB
LowFree: 76740212 kB
SwapTotal: 10482404 kB
SwapFree: 10482404 kB
Dirty: 391588 kB
Writeback: 0 kB
AnonPages: 2370748 kB
Mapped: 48576 kB
Slab: 158860 kB
PageTables: 16716 kB
NFS_Unstable: 0 kB
Bounce: 0 kB
CommitLimit: 51745328 kB
Committed_AS: 3385024 kB
VmallocTotal: 34359738367 kB
VmallocUsed: 268588 kB
VmallocChunk: 34359469555 kB
HugePages_Total: 0
HugePages_Free: 0
HugePages_Rsvd: 0
Hugepagesize: 2048 kB
--------------------------------------------------------------------------------
Dump from /proc/self/status
--------------------------------------------------------------------------------
Name: mira
State: R (running)
SleepAVG: 94%
Tgid: 10829
Pid: 10829
PPid: 6660
TracerPid: 0
Uid: 518 518 518 518
Gid: 512 512 512 512
FDSize: 256
Groups: 512
VmPeak: 2560760 kB
VmSize: 1998696 kB
VmLck: 0 kB
VmHWM: 2356072 kB
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