[mira_talk] Re: 0.5TB not enough space?
- From: Iddo Friedberg <idoerg@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Mon, 15 Aug 2011 12:57:26 -0400
OK. So any rule-of-thumb to calculate the necessary local log space?
On Mon, Aug 15, 2011 at 12:46 PM, Evan <evan@xxxxxxxxxxx> wrote:
> Yes that sounds about right..
>
>
> On Mon, Aug 15, 2011 at 9:41 AM, Iddo Friedberg <idoerg@xxxxxxxxx> wrote:
>
>> Hi,
>>
>> I have 9582196 mate-paired Solexa seqeunces, 100bp long. The genome I am
>> assembling is somewhere between 700KB and 1.5MB (Mycoplasma).
>>
>> Anyhow, It seems like I rant out of my 500GB local space for the log
>> files. Is that reasonable? I can increase local scratch space, I just want
>> to make sure that I am not doing something wrong. Seems like quite a bit of
>> space to be used for such an assembly.
>>
>> Parameters I used:
>>
>> --project=CCGTCC COMMON_SETTINGS -DI:trt=/localscratch/friedbi/mira_logs
>> --job=denovo,genome,accurate,solexa SOLEXA_SETTINGS
>> -GE:tismin=150:tismax=350
>>
>> The entire logfile is available here, if someone is interested in more
>> information: http://db.tt/6VxJ8sW
>>
>> Thanks in advance for any help!
>>
>> Iddo
>>
>>
>> --
>> Iddo Friedberg
>> http://iddo-friedberg.net/contact.html
>>
>
>
--
Iddo Friedberg
http://iddo-friedberg.net/contact.html
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