[rmaexpress_help] Re: RMAExpress still crashes after 1.0 beta 8
- From: Ben Bolstad <bmb@xxxxxxxxxxxxx>
- To: rmaexpress_help@xxxxxxxxxxxxx
- Date: Mon, 03 Mar 2008 07:53:29 -0800
Ok, that makes more sense since the first one you gave me did not seem
to be an Affymetrix array type. I know that things worked with
Arabidopsis ATH1 Arrays in the past, though I have not tested with this
array type in quite awhile.
Ben
On Mon, 2008-03-03 at 07:46 -0800, Alex Feltus wrote:
> My mistake. The GEO accession for the array I am
> using is GPL198.
>
> Alex
>
> --- Alex Feltus <yaqona2@xxxxxxxxx> wrote:
>
> > Hey:
> >
> > I have been able to normalize hundreds of arrays
> > with
> > RMAExpress 1.0 beta 8 compiled from source on an
> > Ubuntu 7.10 system with 8 Xeon cores and 16GB RAM.
> >
> > However, I am unable to normalize a set of 2887
> > arrays. They appear to load but then I get a
> > segmentation fault. Your beta 8 bug fix (- Fix a
> > potential crash situation in extremely large
> > datasets
> > (eg would crash at approximately 1578 HGU-133 plus
> > 2.0
> > CEL files)) sounds like my problem, but maybe the
> > extra arrays kill it?
> >
> > Thanks,
> > Alex
> >
> > --
> > Alex Feltus, Ph.D.
> > Assistant Professor
> > Clemson University
> > Department of Genetics & Biochemistry
> > Biosystems Research Complex Rm 302C
> > 51 New Cherry Street
> > Clemson, SC 29634
> > 864-656-3231 (office) - (864) 656-6879 (fax)
> >
> http://www.clemson.edu/genbiochem/faculty/afeltus.html
> >
> >
> >
> >
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>
> --
> Alex Feltus, Ph.D.
> Assistant Professor
> Clemson University
> Department of Genetics & Biochemistry
> Biosystems Research Complex Rm 302C
> 51 New Cherry Street
> Clemson, SC 29634
> 864-656-3231 (office) - (864) 656-6879 (fax)
> http://www.clemson.edu/genbiochem/faculty/afeltus.html
>
>
>
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