[rmaexpress_help] RMAExpress 1.0 beta 10

  • From: Ben Bolstad <bmb@xxxxxxxxxxxxx>
  • To: rmaexpress_help@xxxxxxxxxxxxx
  • Date: Thu, 20 Mar 2008 20:35:42 -0700

RMAExpress 1.0 beta 10 has been released. As usual it can be downloaded
at:

http://rmaexpress.bmbolstad.com

Changes since 1.0 beta 9
- RMADataConv now will parse MPS files. This allows RMAExpress to be
used for Gene-Level analysis of Exon arrays, previously only exon
summarization was possible.

- CDFRME files produced using PGF/CLF file combinations contain
probesets of the types "main", "normgene->intron" and
"normgene->exon:main", previously only type "main" was included

-The naming convention for CDFRME files produced using PGF/CLF/PS and
MPS files hase changed. Previously all would have been of the format

lib_set_name.lib_set_version.CDFRME (eg HuEx-1_0-st.r2.CDFRME). Now the
three forms are:

lib_set_name.lib_set_version_pgfclf.CDFRME
lib_set_name.lib_set_version_ps_psfilename.CDFRME
lib_set_name.lib_set_version_mps_mpsfilename.CDFRME

eg

HuEx-1_0-st.r2_pgfclf.CDFRME 
HuEx-1_0-st.r2_ps_HuEx-1_0-st-v2.r2.dt1.hg18.full.CDFRME
HuEx-1_0-st.r2_mps_HuEx-1_0-st-v2.r2.dt1.hg18.extended.CDFRME 

this should help distinguish these files more clearly.


-- 
Ben Bolstad 
http://bmbolstad.com


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