Hi Joel, You should make sure that you have turned on the use of PETSc in the cg/ins/Makefile : # sparse solver packages: usePETSc := on When you link cgins you should then see that the files buildEquationSolvers.o, PETScSolver.o and the PETSc libraries are on the link line. ...Bill Joel Guerrero wrote:
Hi kyle, I just checked and now I'm getting this error, which I think is related to the parallel version of petsc. So far I compiled overture with petsc so I dont know what could be the problem. cheers, jg initialize the solution... interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: number of array ID's has increased to 684Cgins::project: project the initial conditions <<<<$$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg) $$$$$$$$$$$$ Oges::buildEquationSolvers:ERROR: solver PETSc is not currently available You may have to copy and edit the file Overture/Oges/buildEquationSolvers.C and a file like PETScEquationSolver.C (if you are trying to use PETSc) and then link the files to your application in order to get a non-standard solver See the Oges documentation for further details error Overture::abort: I am now going to purposely abort so that you can get a traceback from a debugger :18765] [14] ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d) [0x805acd1] [linux-p8i7:18765] *** End of error message ***mpirun noticed that job rank 0 with PID 18765 on node linux-p8i7 exited on signal 6 (Aborted). 1 additional process aborted (not shown)----- Original Message ---- From: Joel Guerrero <joegi.geo@xxxxxxxxx> To: overture@xxxxxxxxxxxxx Sent: Saturday, January 5, 2008 8:15:13 PM Subject: [overture] Re: parallel insHi Kyle,I think I'm using the parallel version of petsc, in anycase I will check. Cheers, Joel ----- Original Message ---- From: Kyle K. Chand <chand1@xxxxxxxx> To: overture@xxxxxxxxxxxxx Sent: Saturday, January 5, 2008 8:11:03 PM Subject: [overture] Re: parallel ins Hi Joel, You will need to use the parallel PETSc solvers to use the parallel inscode. If you have not built Overture with PETSc you will first need to build PETSc and then rebuild Overture.Regards, KyleOn Friday 04 January 2008 16:31, Joel Guerrero wrote:good.Hi, So far I have been using parallel cns, which runs in parallel quiteNow I'm trying to use parallel ins, but I'm getting this error. Any suggestion, joel initialize the solution... interpolateAndApplyBoundaryConditions (start) steps=-1 t=0: numberofarray ID's has increased to 684Cgins::project: project the initial conditions <<<<$$$$$$$$$$$$$$$ Cgins: updateToMatchGrid(CompositeGrid & cg)$$$$$$$$$$$$insBC: after generalizedDivergence: number of array ID's hasincreased to687 Oges::ERROR:serial generateMatrix called in parallel! Overture::abort: I am now going to purposely abort so that you canget atraceback from a debugger [linux-p8i7:16457] *** Process receivedsignal*** [linux-p8i7:16457] Signal: Aborted (6) [linux-p8i7:16457] Signal code: (-6) Oges::ERROR:serial generateMatrix called in parallel! Overture::abort: I am now going to purposely abort so that you canget atraceback from a debugger [linux-p8i7:16458] *** Process receivedsignal*** [linux-p8i7:16458] Signal: Aborted (6) [linux-p8i7:16458] Signal code: (-6) [linux-p8i7:16458] [ 0] [0xffffe440] [linux-p8i7:16458] [ 1] /lib/libc.so.6(abort+0x101) [0xb22481e1] [linux-p8i7:16458] [ 2]../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5a) [0x807989e] [linux-p8i7:16458] [ 3]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges14generateMatrixERi+0x34) [0xb5b48eca] [linux-p8i7:16458] [ 4]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges10formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b489af] [linux-p8i7:16458] [ 5]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18YaleEquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)[0xb5b8c2de][linux-p8i7:16458] [ 6]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b5a630] [linux-p8i7:16458] [ 7]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins32solveForTimeIndependentVariablesER12GridFunction+0xa4b)[0xb77d3e4d][linux-p8i7:16458] [ 8]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins7projectER12GridFunction+0x16fe) [0xb7733da4] [linux-p8i7:16458] [9] /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74ace9e] [linux-p8i7:16458] [10]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins18initializeSolutionEv+0x1e) [0xb78d6de6] [linux-p8i7:16458] [11]/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver5setupERKd+0x4a2d) [0xb752acd7] [linux-p8i7:16458][12] /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73cdb21] [linux-p8i7:16458] [13] ../../../../cg_parallel.v22/ins/bin/cgins [0x805b645] [linux-p8i7:16458] [14]/lib/libc.so.6(__libc_start_main+0xe0)[0xb2232fe0] [linux-p8i7:16458] [15] ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d) [0x805acd1] [linux-p8i7:16458] *** End of error message *** [linux-p8i7:16457] [ 0] [0xffffe440] [linux-p8i7:16457] [ 1] /lib/libc.so.6(abort+0x101) [0xb22511e1] [linux-p8i7:16457] [ 2]../../../../cg_parallel.v22/ins/bin/cgins(_ZN8Overture5abortERK7aString+0x5a) [0x807989e] [linux-p8i7:16457] [ 3]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges14generateMatrixERi+0x34) [0xb5b51eca] [linux-p8i7:16457] [ 4]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges10formMatrixERiS0_NS_23SparseStorageFormatEnumEbb+0xf73) [0xb5b519af] [linux-p8i7:16457] [ 5]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN18YaleEquationSolver5solveER27doubleCompositeGridFunctionS1_+0x184)[0xb5b952de][linux-p8i7:16457] [ 6]/home/joegi/cfd/overture/Overture_parallel.v22/lib/libOverture.so(_ZN4Oges5solveER27doubleCompositeGridFunctionS1_+0x9a) [0xb5b63630] [linux-p8i7:16457] [ 7]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins32solveForTimeIndependentVariablesER12GridFunction+0xa4b)[0xb77dce4d][linux-p8i7:16457] [ 8]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins7projectER12GridFunction+0x16fe) [0xb773cda4] [linux-p8i7:16457] [9] /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver18initializeSolutionEv+0x1220) [0xb74b5e9e] [linux-p8i7:16457] [10]/home/joegi/cfd/overture/cg_parallel.v22/ins/../ins/lib/libCgins.so(_ZN5Cgins18initializeSolutionEv+0x1e) [0xb78dfde6] [linux-p8i7:16457] [11]/home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver5setupERKd+0x4a2d) [0xb7533cd7] [linux-p8i7:16457][12] /home/joegi/cfd/overture/cg_parallel.v22/ins/../common/lib/libCgCommon.so(_ZN12DomainSolver26setParametersInteractivelyEb+0x11b49) [0xb73d6b21] [linux-p8i7:16457] [13] ../../../../cg_parallel.v22/ins/bin/cgins [0x805b645] [linux-p8i7:16457] [14]/lib/libc.so.6(__libc_start_main+0xe0)[0xb223bfe0] [linux-p8i7:16457] [15] ../../../../cg_parallel.v22/ins/bin/cgins(_ZN3MPI3Win4FreeEv+0x10d) [0x805acd1] [linux-p8i7:16457] *** End of error message *** mpirun noticed that job rank 0 with PID 16457 on node linux-p8i7exited onsignal 6 (Aborted). 1 additional process aborted (not shown)____________________________________________________________________________________ Be a better friend, newshound, andknow-it-all with Yahoo! 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