[overture] Re: error compiling CG with undefined reference
- From: Erik Wilson <wilsone@xxxxxx>
- To: overture@xxxxxxxxxxxxx
- Date: Mon, 23 Apr 2012 11:03:03 -0700
Hi David,
It might be worth trying to link with gfortran instead of g++.
Cheers,
-Erik
On 04/23/2012 05:36 AM, David Sinden wrote:
sorry, should have included the line which breaks down, as it contains
the linking of the source files etc
g++ -fPIC -g -w -I/home/dave/Code/Overture/cg.v24/common/src
-I/home/dave/Code/Overture/cg.v24/common/shared
-I/home/dave/Code/Overture/cg.v24/common/moving/src
-I/home/dave/Code/Overture/cg.v24/common/multiComponent/src
-I/home/dave/Code/Overture/cg.v24/common/chemistry
-I/home/dave/Code/Overture/cg.v24/common/dataBase
-I/home/dave/Code/Overture/cg.v24/src
-I/home/dave/Code/Overture/Overture.v24/include
-I/home/dave/Code/Overture/A++P++-0.8.0/A++/install/include
-I/home/dave/Code/Overture/hdf5-1.6.5/include
-I/home/dave/Code/Overture/Mesa-7.5.1/include -o
/home/dave/Code/Overture/cg.v24/common/bin/checkCheckFiles
/home/dave/Code/Overture/cg.v24/common/obj/checkCheckFiles.o
-Wl,-rpath,/home/dave/Code/Overture/Overture.v24/lib
-L/home/dave/Code/Overture/Overture.v24/lib -lOverture
-lOverture_static -Wl,-rpath,/home/dave/Code/Overture/hdf5-1.6.5/lib
-L/home/dave/Code/Overture/hdf5-1.6.5/lib -lhdf5 -ljpeg -lz
-Wl,-rpath,/home/dave/Code/Overture/A++P++-0.8.0/A++/install/lib
-L/home/dave/Code/Overture/A++P++-0.8.0/A++/install/lib -lApp
-lApp_static -Wl,-rpath,/usr -L/usr -llapack -lblas -lgfortran
-Wl,-rpath,/home/dave/Code/Overture/Mesa-7.5.1/lib
-L/home/dave/Code/Overture/Mesa-7.5.1/lib -lGL -lGLU -lOSMesa
-Wl,-rpath,/usr/lib -L/usr/lib -lXm -L/usr/lib -lXpm -lXp -lXt -lXmu
-lXi -lXext -lX11 -Wl,-rpath,/usr/lib/perl/5.12/CORE
-L/usr/lib/perl/5.12/CORE -lperl -ldl -lm -lpthread -lc -lcrypt
On 23 April 2012 13:26, David Sinden <david.sinden@xxxxxxxxx
<mailto:david.sinden@xxxxxxxxx>> wrote:
i have installed overture and it seems to work, at least the
checks, tests and examples all work, with one exception
Running: /home/dave/Code/Overture/Overture.v24/bin/ogen noplot
nopause abortOnEnd
/home/dave/Code/Overture/Overture.v24/sampleGrids/asmo.cmd >
gridsFromCad.out...
Segmentation fault
ERROR running /home/dave/Code/Overture/Overture.v24/bin/ogen
noplot nopause abortOnEnd
/home/dave/Code/Overture/Overture.v24/sampleGrids/asmo.cmd >
gridsFromCad.out. Check the logfile gridsFromCad.out
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ERROR return rt=256
the log file shows that there is no not sure how significant this
is or what it indicates, but something is wrong as i can't make
any of the files from cg as i get errors for a whole host of other
undefined references such as
/home/dave/Code/Overture/Overture.v24/lib/libOverture.so:
undefined reference to `_gfortran_transfer_real_write'
collect2: ld returned 1 exit status
make[1]: ***
[/home/dave/Code/Overture/cg.v24/common/bin/checkCheckFiles] Error 1
make[1]: Leaving directory `/home/dave/Code/Overture/cg.v24/common'
make: *** [libCommon] Error 2
is this a problem from the compilation of overture or a problem in
the linking of cg with overture? as cg uses the make.options
settings from overture i doubt it. i have copied over the defenv
file from overture and load that before compiling so that the
environmental variables are the same, but could this be a problem.
my set up is
hdf5-1.6.5,
mesa-7.5.1
perl (v5.12.4)
gcc version 4.6.1 (Ubuntu/Linaro 4.6.1-9ubuntu3)
and i call the hdf5 and mesa directories directly. it looks
similar to the error reported here:
//www.freelists.org/post/overture/cg-error
thanks, david
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