[mira_talk] Re: restart mira with caf file?
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 21 Jan 2010 20:53:20 +0100
On Donnerstag 21 Januar 2010 Reith, Michael wrote:
> My mira run died sometime early in pass 3 (not yet clear why, though it's
> looking like it may have been a system problem rather than a mira
> problem). Can I use *_out_pass.2.caf as the input file (after renaming of
> course) and do a draft assembly to get a reasonable result without
> starting all over again? Thanks for your help.
Hello Mike,
restart after a crash (whether machine or MIRA) is something on the plan for
after release 3.
In the mean time: if you have something bigger than a bacterium or very small
and simple (without too many repeats) eukaryote, I'd recommend to restart from
anew.
You can indeed use the temporary CAF as input, but if too many repeat markers
are present, MIRA will take quite a long time to resolve them. But simply give
it a try.
Regards,
Bastien
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