[mira_talk] Re: miraSearchESTSNPs
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sun, 31 May 2009 11:56:35 +0200
On Freitag 29 Mai 2009 hegemon78@xxxxxxxxxxxxxx wrote:
> >> 2. Is there any way to force program to do outputs in GAP4 format for
> >> step 1 and step 2?
> >Putting -OUT:org=yes in the me_step*.par file does not work?
>
> no, but in log is:
> ...454 type data present, switching off GAP4DA type output results
> (you *DO NOT* want millions of files in a directory, really)...
Ah, I remember. Yes, that's a fool guard I had built in when 454 came into the
game and gap4 directories regularly had half a million or millions of entries
... which lets filesystems get exteremely slow and system admins despair when
running overnight backups.
Do you have a compelling reason *not* to use the CAF files which are written by
default? If yes I could remove it, but please note that CAFs can be
transformed into a gap4 database via the "caf2gap" command (from the Sanger
Centre) or to a gap4 directory with the "convert_project" command (from the
MIRA package).
Regards,
Bastien
--
You have received this mail because you are subscribed to the mira_talk mailing
list. For information on how to subscribe or unsubscribe, please visit
http://www.chevreux.org/mira_mailinglists.html
Other related posts:
