[mira_talk] Re: mira strain analysis caf files, and tracing the assemblies.

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Thu, 24 Mar 2011 01:38:45 +0100

On Thursday 24 March 2011 01:33:32 Robin Kramer wrote:
> That is what I thought, but I can't seem to find much assembly information
> for this particular read in step2.  It is in the step2_reads.caf file, but
> there are no reads associated with it, to go back to step1.  I was
> expecting it to be in the step2_strainname directory, but it isn't in any
> of the caf, fasta, or various info files either.

"rgrep" is your friend :-)

If that read is not in any of the "step2_*" directories (don't forget the 
'default' "strainname"), it has been dropped after step1.

B.

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