[mira_talk] Re: help with mapping assembly for ion torrent data
- From: Peter Cock <p.j.a.cock@xxxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 28 May 2013 09:39:39 +0100
On Tue, May 28, 2013 at 3:42 AM, Austen Chen
<austen.chen@xxxxxxxxxxxxxxx> wrote:
> Thanks Bastien, and you must think what the hell you still use that old
> version; well I maybe dumb in terms of bioinformatics (as a biologist trying
> to embark on this new field) but not that dumb when a new and better version
> is available. The problem is that our linux server uses an old gcc version
> and doesn't allow installation of new mira versions. When I asked them to
> install 3.9.15 and that's what happened:
>
> Updating gcc will break some other stuff on the server, so I can not do it.
> I have backed mira down to 3.4.1.1, and will continue to look into a
> solution. Sorry I can't do the upgrade at this point.
>
> That's why I tried to install it on my mac but ran into a problem with gcc
> compiler (if you can recall that I have sent you a mail regarding this) and
> you suggested not to use Mac.
Have you tried the pre-compiled Linux binaries Bastien has made?
Those should just work (although if your Linux is very old there could
be problems), and this is much simpler than compiling MIRA locally.
Regards,
Peter
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