[mira_talk] Re: help with mapping assembly for ion torrent data

  • From: Bastien Chevreux <bach@xxxxxxxxxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Mon, 27 May 2013 17:50:02 +0200

On May 27, 2013, at 12:15 , Austen Chen <austen.chen@xxxxxxxxxxxxxxx> wrote:
> The version I used was v3.4.1.1

Do yourself a favour and take the latest development version for Ion data:

  http://sourceforge.net/projects/mira-assembler/files/MIRA/development/

Docs in the package or online here:

  http://mira-assembler.sourceforge.net/docs-dev/DefinitiveGuideToMIRA.html

Please read up the four or five sections on how to write manifest files

  
http://mira-assembler.sourceforge.net/docs-dev/DefinitiveGuideToMIRA.html#sect_ref_config

and here's a simple example for a mapping assembly with Illumina data (you'll 
be able to find out how to change file formats and technology used, I'm sure):

  
http://mira-assembler.sourceforge.net/docs-dev/DefinitiveGuideToMIRA.html#sect_sxa_ma_writing_a_simple_manifest_file

B.

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