[mira_talk] data over-load

  • From: "Giuseppe D'Auria" <giuseppe.dauria@xxxxx>
  • To: mira_talk@xxxxxxxxxxxxx
  • Date: Wed, 18 Feb 2009 08:41:24 +0100

Dear all,

I am working with a big big 454-titanium assembly and I had an overload
of data resulting in a coverage around 150X (quite exaggerate).
some body knows if there is some tool that, similarly to convert_project
of caftools (that allows reducing the alignment for minimum coverage and
minimum length of contigs), can reduce the contigs for redundant reads
for example cutting the contigs at a specified value of coverage?

Thank you in advance


Dr. Giuseppe D'Auria

Cavanilles Institute for
Biodiversity and Evolutionary Biology
University of Valencia
"Poligono de la Coma" s/n
46980 Paterna (Valencia),Spain

web: http://www.uv.es/cavanilles/genevol/
tel: +34 9635 43646

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