[mira_talk] convert_project -r -v
- From: Nestor Zaburannyi <nestor@xxxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 28 Jul 2011 09:12:13 +0200
Dear all,
I have tried to use convert_project in order to get rid of the chimeric reads
at the ends of the contigs, which prevent further contig-joining.
I use:
convert_project -f maf -t fasta -r c -v 2 infile.maf outfile.fasta
but the contigs remain the same, I still have stretches on the ends with
coverage = 1. Why these are not converted to N's? Can MIRA filter out regions
with coverage=n during assembly? Any trick/switch?
Sincerely yours
Nestor
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