[mira_talk] Re: caf2gap
- From: Brian Forde <bforde@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Tue, 13 Sep 2011 09:49:50 +0100
Thanks Nestor,
I have resigned myself to using gap5
regards
Brian
On Tue, Sep 13, 2011 at 9:32 AM, Nestor Zaburannyi <nestor@xxxxxxxxxxxxx>wrote:
> Dear Brian,
>
> I tried to contact the authors of caftools, but unsuccessfully. Another
> person somehow close to the authors said that it will unlikely ever be
> fixed.
> You know, of course, that gap5 can handle *.ace files almost directly? I
> see no other way around it.
>
> Sincerely yours
> Nestor
>
>
> Hello All,
>
> I know that this error has probably surfaced many times but I wonder does
> anyone have a solution for it. I have done a basic solexa mapping assembly
> mira and used only enough reads for 100X coverage (CO:msr=yes). However, no
> matter how few read I use I continuously get the same caf2gap error
>
> !! FATAL ERROR: system error 12 Cannot allocate memory
> !! Memory allocation failure when requesting -2147483648 bytes
> Aborted
>
> I know that this is an issue with caftools but does anyone have a solution
>
> regards
>
> Brian
>
>
>
> *--
> З повагою,
> Nestor
> mailto:nestor@xxxxxxxxxxxxx<nestor@xxxxxxxxxxxxx>
> *
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