[mira_talk] Re: Where is my assembly at?
- From: Artemus Harper <subanark@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 21 Sep 2011 13:48:05 -0700
The best I can give you is:
http://hpcweb.wsu.edu/ganglia/?r=week&c=wsuhpc-gp&h=gp2&mc=2
Which shows the stats on the node over the last week. The dip in the graph
is where mira died and another process started to take over.
On Wed, Sep 21, 2011 at 1:26 PM, Bastien Chevreux <bach@xxxxxxxxxxxx> wrote:
> On Sep 21, 2011, at 21:44 , Artemus Harper wrote:
> > Well I let is continue to run. But it looks like it finally died on its
> own:
> > [68911] aaaaa+a+aa++++++++++s+a+++a+aaaaaaaaaaaaaaasas+aaa++++saassa
> 11752 77917 / 2076 / 1333
> > [68933] +++asas+ssss+aaa+aaa+aa+a+++a++a+ass+a++a+a+a++a+aaaaaaBus error
>
> Bus error? What is a bus error? Did you by any chance make a screenshot of
> "top" or similar ? I'd be interested how that poor thing handled >>100m
> reads. It's a pity you did not have the output redirected to a file though
> ... a couple of things would have given me clues to where the next
> bottlenecks could be.
>
> > Have you been able to get a version of mira that might have a better shot
> at plant genomes up yet?
>
> I'm still on it right now. The data sets I am currently working with at
> work showed me a couple bugs in my overlap reduction logic and I am busy
> implementing them.
>
> Will get back to you asap.
>
> B.
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Artemus Harper
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