Hi, Bastien.I'm assembling Solexa paired-end reads with MIRA using the default Solexa read-naming convention, but I have no idea if MIRA is actually using the mate-pair information. I've looked at the logs, but I can't find any information about mate-pairs.
I have to admit that I just assumed mate-pair information is used by MIRA. However, when I used the "tablet" viewer to examine a MIRA 'ace' file from my Solexa paired-end assembly, it showed no mate-pairs.
This is the MIRA command-line I used: mira -project=meta \ -job=denovo,genome,normal,454,solexa \ COMMON_SETTINGS -GE:not=8 -SK:nrr=50 \ 454_SETTINGS -LR:lsd=on,ft=fasta \ SOLEXA_SETTINGS -LR:lsd=on,ft=fastq Can you enlighten me? Thanks, Tony. -- Dr. A.J.Travis, University of Aberdeen, Rowett Institute of Nutrition and Health, Greenburn Road, Bucksburn, Aberdeen AB21 9SB, Scotland, UK tel +44(0)1224 712751, fax +44(0)1224 716687, http://www.rowett.ac.uk mailto:a.travis@xxxxxxxxxx, http://bioinformatics.rri.sari.ac.uk -- You have received this mail because you are subscribed to the mira_talk mailing list. For information on how to subscribe or unsubscribe, please visit http://www.chevreux.org/mira_mailinglists.html