[mira_talk] Re: Solexa paired ends and 454 single reads
- From: "Bastien Chevreux" <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Fri, 22 Jan 2010 10:57:49 +0100 (MET)
> From: Mihaela Angelova<mihaela.angelova@xxxxxxxxx>
> [...]
> I also did a run with half of the paired reads (and PEC was on by
> default) but the same was happening.
> Thank you for your help.
I suppose it's swapping itself to death as even with 40mers there's no way MIRA
can accomodate 37 million reads in 60GB.
Please use "miramem" to get a feeling of how many reads you should take (I'd
take 10m for a decently sized bacterium).
Regards,
Bastien
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