[mira_talk] Re: Singlets after hybrid assembly
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Sun, 6 Sep 2009 17:52:06 +0200
On Sonntag 06 September 2009 Bastien Chevreux wrote:
> I fixed
> that in the current development code. In the mean time, could you please
> try the following command line:
>
> ./mira -project=Bot -job=denovo,est,normal,sanger,454
> 454_SETTINGS -CL:cpat=on
>
> >&log_assembly.txt
Please disregard the previous comman dline. The problem is a bit more complex,
please use this command line for the time being:
COMMON_SETTINGS
-GE:kcim=no:crhf=no
-AS:sd=no:ard=no:urd=no:klrs=no:ugpf=no:uess=yes:esspd=500:umcbt=yes:bts=3600
-CL:pec=no:pecbph=0
-SK:mhpr=30:mnr=no
-OUT:orw=no
SANGER_SETTINGS
-AL:egp=yes:egpl=reject_codongaps
-DP:ure=no
-
CL:msvs=no:pvlc=no:qc=yes:bsqc=no:mbc=yes:cpat=yes:cpkps=no:cpmsl=12:cpmea=1:cpmgfe=20000:emlc=no:emrc=no
454_SETTINGS
-AL:egp=yes:egpl=reject_codongaps
-
CL:msvs=no:pvlc=no:qc=no:bsqc=no:mbc=yes:cpat=yes:cpkps=no:cpmsl=12:cpmea=1:cpmgfe=20000:emlc=no:emrc=no
B.
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