[mira_talk] Re: "Simple" assembly: contigs and reads from closing PCRs
- From: Lionel Guy <guy.lionel@xxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Thu, 18 Aug 2011 16:53:21 +0200
Thanks, it worked like a charm.
Cheers,
Lionel
On 17 Aug 2011, at 23:17 , Bastien Chevreux wrote:
> On Wednesday 17 August 2011 23:03:09 Lionel Guy wrote:
> > > You could either
> > > a) switch off all clipping routines in MIRA, i.e.
> > >
> > > "--noclipping -CL:pec:no"
> >
> > Well, I'll try that. But then my closing reads might go wrong, right? I
> > could then hard clip them before (they are soft clipped in the xml, but I
> > don't know if -noclipping -CL:pec:no overrides that)
>
> MIRA will honour the clips in the XML on loading, so they're fine.
>
> B.
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