[mira_talk] Re: "Simple" assembly: contigs and reads from closing PCRs
- From: Bastien Chevreux <bach@xxxxxxxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 17 Aug 2011 23:17:06 +0200
On Wednesday 17 August 2011 23:03:09 Lionel Guy wrote:
> > You could either
> > a) switch off all clipping routines in MIRA, i.e.
> >
> > "--noclipping -CL:pec:no"
>
> Well, I'll try that. But then my closing reads might go wrong, right? I
> could then hard clip them before (they are soft clipped in the xml, but I
> don't know if -noclipping -CL:pec:no overrides that)
MIRA will honour the clips in the XML on loading, so they're fine.
B.
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