[mira_talk] SOLVED Re: General installation question - MIRA utilities
- From: Aaron Aunins <auninsaw@xxxxxxx>
- To: mira_talk@xxxxxxxxxxxxx
- Date: Wed, 29 May 2013 15:19:07 -0400
Hi everyone - after a couple suggestions to try the binaries instead of
installing from source, I have mirabait and other utilities working well.
Thanks for the help and fast responses.
Aaron
On Wed, May 29, 2013 at 10:48 AM, Aaron Aunins <auninsaw@xxxxxxx> wrote:
> Hello - I have a basic question about installation of MIRA 3.4.1.1 and
> it's utilities as described in Chapter 11 of the definitive guide to MIRA.
>
> The machine I am installing MIRA 3.4.1.1 on is running Linux Redhat 6.1. I
> am new to Linux and installing software from source, but I managed to
> install all of the dependencies required for installation of MIRA. The
> following is what finally worked for running ./configure to install MIRA:
>
> ./configure CPPFLAGS="-I/media/biotools/boost_1_53_0 -I/usr/local/lib64"
> LDFLAGS="-I/media/data/biotools/boost_1_53_0/stage/lib -I/usr/local/lib64"
> --with-boost-libdir=/usr/local/lib
>
> It is entirely possible some of that may not be necessary, but this is the
> only way I could run make and make install with no errors. Anyway, MIRA
> appears to run fine. However, I cannot run mirabait. In the INSTALL file
> section 3, running ./configure should install mira, convert_project,
> fastatool, scftool, and uncover_at. All of these utilities are functional,
> but I get no usage/manual file for mirabait. My machine says 'command not
> found' when I type mirabait at the command line. When I try to use mirabait
> as described elsewhere in the mailing list archives, mappings and project
> conversions all work, but mirabait does not.
>
> Could someone please point me in the right direction of what I may have
> done wrong with my installation that I do not have a functioning mirabait
> utility? I want to have this installed so I can try out the new MITObim
> script (Hahn et al. 2013).
>
> Thanks for your time,
>
> Aaron Aunins
>
> --
> Ecological Genetics Laboratory
> Virginia Commonwealth University
> Life Sciences Building, Rm 327
> 1000 West Cary St
> Richmond, VA 23284-2012
> Office Phone: 804-828-0906
>
--
Ecological Genetics Laboratory
Virginia Commonwealth University
Life Sciences Building, Rm 327
1000 West Cary St
Richmond, VA 23284-2012
Office Phone: 804-828-0906
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